RchiOBHm_Chr4g0411141

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003527
Physical Location & Seq
Forward (+)
34938069 .. 34940991
2923 bp
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UTR
Exon/CDS
Intron
PRQ38199

Sequence Viewer

Length: 429 bp
ATGGAGGTCTCCACTCAAGGACTGGGTTGCATGGGCATGTCCGTCTTCTATGGCCCCTCGAAGCCCAAACCAAACATGATCAAACTCATCCACTACGCCACCAACGCCGGCGTCACCTTCCTCTATACCGCTGATGTTTACGGTCTCTTCACCAACAAACTTCTTCTCAGCAAGCCTTTGAGTGAAGGAGTAGTGAGAGACAAGGTTGAATTGACCACCAAATTCAGTATCAGCTTTGAGGACAACCAAATGGAGATTCAAGGTCTGCTGTCATATGTGAGAGCTGCTTGTGAAGGAAGCTTGAAATGCCTTGGTCATCGGATTGACACCCGTGTCCCCATTGAAGTCAGGGTTTGTTTTCTTTTCCAATTTGATCTCTCTGCATCAAGTCATTTCTTCTTCAATTCTTCAATTTCTTATGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

142

Amino Acids

15.81

Weight (kDa)

7.67

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 12 - 105 8.6e-07 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AciI CCGC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 111
AgsI TTSAA 6 cut(s) 209, 260, 304, 344, 403, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 3 cut(s) 234, 284, 300
AluI AGCT 3 cut(s) 234, 284, 300
Alw26I GTCTC 3 cut(s) 13, 149, 192
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 106, 142
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 3 cut(s) 13, 149, 192
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 392
BmuI ACTGGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 2 cut(s) 13, 149
BsaJI CCNNGG 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 3 cut(s) 13, 149, 192
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 2 cut(s) 13, 149
Bsp143I GATC 2 cut(s) 78, 373
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 55
BspTNI GGTCTC 2 cut(s) 13, 149
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 78, 373
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 109, 173
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 2 cut(s) 81, 376
BstMAI GTCTC 3 cut(s) 13, 149, 192
BstMBI GATC 2 cut(s) 78, 373
BstMWI GCNNNNNNNGC 2 cut(s) 104, 306
BstNSI RCATGY 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 109, 173
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 100
CviAII CATG 3 cut(s) 31, 37, 76
CviJI RGCY 6 cut(s) 54, 64, 175, 234, 284, 300
CviKI_1 RGCY 6 cut(s) 54, 64, 175, 234, 284, 300
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 80, 375
DpnII GATC 2 cut(s) 78, 373
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 310
Eco31I GGTCTC 2 cut(s) 13, 149
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 3 cut(s) 34, 40, 79
FaiI YATR 8 cut(s) 32, 38, 51, 77, 126, 274, 276, 420
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 30, 36, 75
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 3 cut(s) 34, 40, 79
HindIII AAGCTT 1 cut(s) 298
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 106, 142
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 127, 179, 287
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 30, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 306
HpyF3I CTNAG 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 3 cut(s) 34, 40, 79
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 373
LpnPI CCDG 3 cut(s) 8, 121, 334
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 112
MalI GATC 2 cut(s) 80, 375
MboI GATC 2 cut(s) 78, 373
MboII GAAGA 6 cut(s) 37, 139, 155, 388, 391, 399
MluCI AATT 5 cut(s) 209, 221, 368, 403, 411
MnlI CCTC 3 cut(s) 67, 131, 232
MreI CGCCGGCG 1 cut(s) 107
MroNI GCCGGC 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 104, 306
NaeI GCCGGC 1 cut(s) 109
NdeI CATATG 1 cut(s) 274
NdeII GATC 2 cut(s) 78, 373
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 3 cut(s) 34, 40, 79
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 1 cut(s) 40
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 78, 373
Sau96I GGNCC 1 cut(s) 53
SetI ASST 7 cut(s) 9, 119, 207, 236, 265, 286, 302
SfaNI GCATC 1 cut(s) 392
SgrAI CRCCGGYG 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 5 cut(s) 209, 221, 368, 403, 411
SsiI CCGC 1 cut(s) 129
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 59
TasI AATT 5 cut(s) 209, 221, 368, 403, 411
TfiI GAWTC 1 cut(s) 256
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 31
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.