Rh4CG177300

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003527
Physical Location & Seq
Forward (+)
38583407 .. 38583798
392 bp
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UTR
Exon/CDS
Intron
Rh4CG177300.1

Sequence Viewer

Length: 312 bp
ATGGGGATGTTCATCTTCTTTGGCCCTCTAAAGCCCGAACCAAACATGATCAAACTCATCCACCACGCCACTGACACCGGGGTCACCTTCCTTGATATCGCTGACCTTTATGGTCCCTTCATCAATGAACTTCTTTTCGGCAAGCCTTTGAGTGGAGGGGTGAGAGACAAGCTTGAATTGGCCACCAAATTTGGTATCAGCTTTGAGGACAACAAGAGAGAGATTATTCAAGGGGAGTCGGCATATGTGAGAGTTGCTAGTGAAGGAATCTTGAAACGCCTTGGTGTAGACTTTATTGATCTCTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

5.27

Isoelectric Point (pI)

21.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 12 - 103 1.2e-11 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 288
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 3 cut(s) 176, 230, 274
AluBI AGCT 2 cut(s) 172, 201
AluI AGCT 2 cut(s) 172, 201
Alw26I GTCTC 1 cut(s) 159
AoxI GGCC 2 cut(s) 22, 180
ApoI RAATTY 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 23, 113
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 76, 172
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 182
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 23, 113
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 78, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 78, 280
BseGI GGATG 2 cut(s) 12, 57
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 152
BshFI GGCC 2 cut(s) 24, 182
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 2 cut(s) 24, 182
Bsp143I GATC 2 cut(s) 48, 298
BspANI GGCC 2 cut(s) 24, 182
BspLI GGNNCC 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 78, 280
BssMI GATC 2 cut(s) 48, 298
BssT1I CCWWGG 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 12, 57
BstKTI GATC 2 cut(s) 51, 301
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 48, 298
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 77
BsuRI GGCC 2 cut(s) 24, 182
BtsCI GGATG 2 cut(s) 12, 57
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 23, 113
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 1 cut(s) 46
CviJI RGCY 6 cut(s) 24, 34, 145, 172, 182, 201
CviKI_1 RGCY 6 cut(s) 24, 34, 145, 172, 182, 201
DpnI GATC 2 cut(s) 50, 300
DpnII GATC 2 cut(s) 48, 298
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 280
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 47, 111, 244, 246
FaqI GGGAC 1 cut(s) 99
FatI CATG 1 cut(s) 45
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 1 cut(s) 288
FokI GGATG 2 cut(s) 19, 44
FspBI CTAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 24, 182
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 236, 267
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 76, 172
Hpy166II GTNNAC 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 97, 127, 257
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 48, 298
LpnPI CCDG 1 cut(s) 91
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 50, 300
MboI GATC 2 cut(s) 48, 298
MboII GAAGA 1 cut(s) 7
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 2 cut(s) 176, 188
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 3 cut(s) 36, 149, 199
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 79
NciI CCSGG 1 cut(s) 79
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 48, 298
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 267
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 23, 113
Sau3AI GATC 2 cut(s) 48, 298
Sau96I GGNCC 2 cut(s) 23, 113
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 79
SetI ASST 4 cut(s) 89, 108, 174, 203
SinI GGWCC 1 cut(s) 113
Sse9I AATT 2 cut(s) 176, 188
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 280
TasI AATT 2 cut(s) 176, 188
TfiI GAWTC 1 cut(s) 267
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 109, 141
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.