RchiOBHm_Chr4g0409721

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003527
Physical Location & Seq
Forward (+)
33365396 .. 33365644
249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38070

Sequence Viewer

Length: 249 bp
ATGAGGAGGATGAAGCTGGGGTCACAAGGTCTGGAGGTCTCGACTCAAGTACTGGGTTGCGTGGGCATGTCAGTCTTTTATGGCCCCCCGAAGCCCGAGCCAAACTTGATCACATTCCTTCACCACGCCATTGACACTGGCGTTACCTTCCTTGATACCGCTGATGTTTACTGTCCCTTCACCAACGAACTTCTTCTGGGCAAGGTAATCAAGCACTGTTGTTCTTTGCATGTAGCTACTATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

82

Amino Acids

8.94

Weight (kDa)

6.88

Isoelectric Point (pI)

22.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 22 - 72 8.9e-07 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AfaI GTAC 1 cut(s) 51
AluBI AGCT 2 cut(s) 16, 236
AluI AGCT 2 cut(s) 16, 236
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 113, 172
AvaI CYCGRG 1 cut(s) 95
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 85
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 57, 142
BseGI GGATG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 57, 142
BseRI GAGGAG 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 43
BsrI ACTGG 2 cut(s) 57, 142
BssMI GATC 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 173, 218
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 70, 233
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 135, 214
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 50
CviAII CATG 2 cut(s) 67, 230
CviJI RGCY 6 cut(s) 16, 84, 94, 100, 236, 246
CviKI_1 RGCY 6 cut(s) 16, 84, 94, 100, 236, 246
CviQI GTAC 1 cut(s) 50
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 95
FaeI CATG 2 cut(s) 70, 233
FaiI YATR 4 cut(s) 68, 81, 231, 242
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 66, 229
FbaI TGATCA 1 cut(s) 108
FokI GGATG 1 cut(s) 22
FspBI CTAG 1 cut(s) 247
GsaI CCCAGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 84
Hin1II CATG 2 cut(s) 70, 233
HinfI GANTC 1 cut(s) 43
HphI GGTGA 2 cut(s) 113, 172
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 32, 40
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 128, 157, 187
HpyCH4III ACNGT 2 cut(s) 173, 218
HpyCH4V TGCA 1 cut(s) 229
Hsp92II CATG 2 cut(s) 70, 233
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 5 cut(s) 2, 17, 38, 123, 182
MaeI CTAG 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 21, 142
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 161
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 70, 233
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 21
NspI RCATGY 2 cut(s) 70, 233
PdmI GAANNNNTTC 1 cut(s) 192
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 83
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 51
SchI GAGTC 1 cut(s) 37
SetI ASST 6 cut(s) 18, 31, 39, 149, 207, 238
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 173, 218
TaqI TCGA 1 cut(s) 41
TatI WGTACW 1 cut(s) 49
TscAI CASTG 2 cut(s) 142, 221
TseFI GTSAC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 2 cut(s) 142, 221
XceI RCATGY 2 cut(s) 70, 233
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 1 cut(s) 247
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.