Rh4CG178600

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003527
Physical Location & Seq
Forward (+)
38941322 .. 38941762
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG178600.1

Sequence Viewer

Length: 279 bp
ATGGCGAGCATGAGGAAGATGAAGCCGGGGTCACAAGGCGTTGAGGTTTCGGCTCAAGGATTGGGTTACATGGGCATGTCCGTCTTCTATGGCCCCCCAAAGCCCGAACCGGACATGATCAAACTCATCCACCACACCATCGACGCCGGCGTCACCTACCTTAATATCGCTGATGTTTACGGTCCCTTCACCAACGACCTTAATTCTTCTGGGCAAGATAATCAAGCACTGTTGTTCTTTGCATGTAGCCACTGTGAGCTAGCTTTTTTGGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

92

Amino Acids

9.99

Weight (kDa)

5.0

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AcyI GRCGYC 2 cut(s) 144, 150
AluBI AGCT 2 cut(s) 259, 263
AluI AGCT 2 cut(s) 259, 263
AoxI GGCC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 92, 182
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 145, 181
AsuNHI GCTAGC 1 cut(s) 259
AvaII GGWCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 76
BccI CCATC 1 cut(s) 146
BclI TGATCA 1 cut(s) 117
BcnI CCSGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 92, 182
BmiI GGNNCC 2 cut(s) 94, 184
BmrFI CCNGG 1 cut(s) 27
BmtI GCTAGC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 27
BsaHI GRCGYC 2 cut(s) 144, 150
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 126
BshFI GGCC 1 cut(s) 93
BsiSI CCGG 3 cut(s) 26, 110, 147
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 117
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 94, 184
BspOI GCTAGC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 117
BssNI GRCGYC 2 cut(s) 144, 150
Bst4CI ACNGT 3 cut(s) 182, 231, 254
BstACI GRCGYC 2 cut(s) 144, 150
BstC8I GCNNGC 3 cut(s) 7, 148, 261
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstNSI RCATGY 2 cut(s) 79, 246
BstSCI CCNGG 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 227, 250
Cac8I GCNNGC 3 cut(s) 7, 148, 261
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 92, 182
CseI GACGC 2 cut(s) 139, 152
CviAII CATG 5 cut(s) 10, 70, 76, 115, 243
CviJI RGCY 7 cut(s) 25, 53, 93, 103, 249, 259, 263
CviKI_1 RGCY 7 cut(s) 25, 53, 93, 103, 249, 259, 263
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 182
FaeI CATG 5 cut(s) 13, 73, 79, 118, 246
FaiI YATR 6 cut(s) 11, 71, 77, 90, 116, 244
FaqI GGGAC 1 cut(s) 168
FatI CATG 5 cut(s) 9, 69, 75, 114, 242
FbaI TGATCA 1 cut(s) 117
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 93
HapII CCGG 3 cut(s) 26, 110, 147
HgaI GACGC 2 cut(s) 139, 152
Hin1I GRCGYC 2 cut(s) 144, 150
Hin1II CATG 5 cut(s) 13, 73, 79, 118, 246
HpaII CCGG 3 cut(s) 26, 110, 147
HphI GGTGA 2 cut(s) 145, 181
Hpy166II GTNNAC 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 3 cut(s) 182, 231, 254
HpyCH4V TGCA 1 cut(s) 242
Hsp92I GRCGYC 2 cut(s) 144, 150
Hsp92II CATG 5 cut(s) 13, 73, 79, 118, 246
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 4 cut(s) 39, 123, 160, 195
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 3 cut(s) 30, 65, 151
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 3 cut(s) 28, 76, 198
MluCI AATT 1 cut(s) 202
MnlI CCTC 2 cut(s) 6, 37
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 2 cut(s) 162, 201
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 3 cut(s) 26, 110, 147
MspR9I CCNGG 1 cut(s) 27
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 27
NdeII GATC 1 cut(s) 117
NgoMIV GCCGGC 1 cut(s) 146
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 5 cut(s) 13, 73, 79, 118, 246
NlaIV GGNNCC 2 cut(s) 94, 184
NmuCI GTSAC 2 cut(s) 30, 151
NspI RCATGY 2 cut(s) 79, 246
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 94, 184
PspPI GGNCC 2 cut(s) 92, 182
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 162, 201
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 2 cut(s) 92, 182
ScrFI CCNGG 1 cut(s) 27
SetI ASST 6 cut(s) 48, 158, 162, 201, 261, 265
SgrAI CRCCGGYG 1 cut(s) 146
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 182, 231, 254
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 202
Tru1I TTAA 2 cut(s) 162, 201
Tru9I TTAA 2 cut(s) 162, 201
TscAI CASTG 2 cut(s) 234, 257
TseFI GTSAC 2 cut(s) 30, 151
Tsp45I GTSAC 2 cut(s) 30, 151
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 234, 257
VpaK11BI GGWCC 1 cut(s) 182
XceI RCATGY 2 cut(s) 79, 246
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.