Rh4AG165200

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003527
Physical Location & Seq
Forward (+)
41759898 .. 41760212
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG165200.1

Sequence Viewer

Length: 234 bp
ATGATCAATCTCATCCACCACGTCGTCGACGCTGGCATCATCTTCCTTGATACCGTTGACGTTTATGGTCCCTTCACCAACGAACTTCTTCTCGACAAGGCTTTGATTGGAGGAGAAAGAGACAAGGTTGAACTGGCCACCAAATTTGGTATCAACTTTGAGGACGACAAGAGAGAGATTATTCGAGGCGAGCCAGCATATGTGAGAGTTTCTTGTGAAGGAAGCTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

77

Amino Acids

8.62

Weight (kDa)

4.82

Isoelectric Point (pI)

11.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 2 - 77 4.8e-08 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 143
AgsI TTSAA 2 cut(s) 131, 229
AjiI CACGTC 1 cut(s) 22
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 137
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 137
BslFI GGGAC 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 138
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 55
BstC8I GCNNGC 3 cut(s) 34, 191, 195
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 137
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 34, 191, 195
Cfr13I GGNCC 1 cut(s) 68
CseI GACGC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviJI RGCY 4 cut(s) 101, 137, 193, 225
CviKI_1 RGCY 4 cut(s) 101, 137, 193, 225
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 68
FaiI YATR 3 cut(s) 66, 199, 201
FaqI GGGAC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 137
HgaI GACGC 1 cut(s) 38
HincII GTYRAC 2 cut(s) 28, 58
HindII GTYRAC 2 cut(s) 28, 58
HindIII AAGCTT 1 cut(s) 223
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 28, 58
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 28, 58
Hpy99I CGWCG 3 cut(s) 26, 29, 32
HpyAV CCTTC 2 cut(s) 82, 212
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 21, 60
HpySE526I ACGT 2 cut(s) 21, 60
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 3 cut(s) 18, 119, 207
LweI GCATC 1 cut(s) 45
MaeII ACGT 2 cut(s) 21, 60
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 34, 80
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 137
MnlI CCTC 3 cut(s) 104, 154, 179
Mox20I TGGCCA 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 87
MscI TGGCCA 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 137
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 68
SalI GTCGAC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 68
SetI ASST 4 cut(s) 24, 63, 129, 227
SfaNI GCATC 1 cut(s) 45
SgrDI CGTCGACG 1 cut(s) 26
SinI GGWCC 1 cut(s) 68
Sse9I AATT 1 cut(s) 143
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 2 cut(s) 24, 63
TaqI TCGA 3 cut(s) 27, 93, 184
TasI AATT 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.