Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001244.1

Orthogroup ID

OG0003527

Physical Location & Seq

Genomic Coordinates Forward (+)

21354 .. 21870

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001244.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggcgggcgtgaggaggatcaagctcgggtcacagggcctggaggtctcagctcaaggactcggctgcatgggcatgtcctccttctatgggcccccgaagcccgatgccgacatgatcaagctcatccaccacgccgtcgactccggcgtcaccttcctcgacacctccgacatctacggcccccacaccaacgaaattctcctcggcaaagctttgagtggaggggtgagagacaaggttgaattggccacgaaatttggtatcagctttgaggacaacaagagagaggttcggggcgatccggcttatgtcaggtctgcttgtgaaggaagcttgaaacgcctcggtgttaattgtgtggatctctattatcagcatcggatcgacattcgtctccccattgaagtcacggtttgttttcttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

143

Amino Acids

15.64

Weight (kDa)

6.95

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60730
malus_domestica	MD05G1104100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0409681 RchiOBHm_Chr4g0409721 RchiOBHm_Chr4g0411091 RchiOBHm_Chr4g0411131 RchiOBHm_Chr4g0411141
rosa_laevigata	RLG00000008375
rosa_multiflora	Rmu_sc0001244.1_g000004 Rmu_sc0001244.1_g000005 Rmu_sc0007879.1_g000009 Rmu_sc0033547.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355720
rosa_rugosa	Rorug01G0109900
rosa_samantha	Rh4AG157600 Rh4AG163200 Rh4AG164000 Rh4AG164300 Rh4AG164500 Rh4AG164600 Rh4AG165200 Rh4AG165300 Rh4AG165900 Rh4AG166000 Rh4AG166200 Rh4BG157100 Rh4BG157300 Rh4BG163300 Rh4CG177300 Rh4CG178200 Rh4CG178600 Rh4DG159000 Rh4DG160300 Rh4DG160400 Rh4DG160900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	4 cut(s)	26, 296, 372, 392
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	198, 257
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	245, 340, 407
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	6 cut(s)	25, 53, 124, 215, 270, 336
AluI	AGCT	6 cut(s)	25, 53, 124, 215, 270, 336
Alw26I	GTCTC	3 cut(s)	52, 228, 401
AlwI	GGATC	4 cut(s)	26, 296, 372, 392
AlwNI	CAGNNNCTG	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	4 cut(s)	37, 92, 181, 249
ApaI	GGGCCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	2 cut(s)	198, 257
AspS9I	GGNCC	4 cut(s)	37, 92, 93, 182
AsuHPI	GGTGA	2 cut(s)	145, 241
AvaI	CYCGRG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	122, 196
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	52, 228, 401
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	4 cut(s)	37, 92, 93, 182
BmiI	GGNNCC	3 cut(s)	94, 95, 184
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	97, 388
BoxI	GACNNNNGTC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	205, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	205, 346
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	28, 194
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	53
BshFI	GGCC	4 cut(s)	39, 94, 183, 251
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	147, 305
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	3 cut(s)	52, 228, 401
BsmBI	CGTCTC	1 cut(s)	401
BsnI	GGCC	4 cut(s)	39, 94, 183, 251
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	26
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	5 cut(s)	18, 117, 301, 364, 384
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	4 cut(s)	39, 94, 183, 251
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	94, 95, 184
BspPI	GGATC	4 cut(s)	26, 296, 372, 392
BspTNI	GGTCTC	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	205, 346
BssMI	GATC	5 cut(s)	18, 117, 301, 364, 384
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	5 cut(s)	21, 120, 304, 367, 387
BstMAI	GTCTC	3 cut(s)	52, 228, 401
BstMBI	GATC	5 cut(s)	18, 117, 301, 364, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 100, 342
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	79
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	4 cut(s)	39, 94, 183, 251
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	4 cut(s)	37, 92, 93, 182
CseI	GACGC	1 cut(s)	139
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	3 cut(s)	70, 76, 115
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	5 cut(s)	20, 119, 303, 366, 386
DpnII	GATC	5 cut(s)	18, 117, 301, 364, 384
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	26
EcoO109I	RGGNCCY	2 cut(s)	37, 93
EcoRII	CCWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	96
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	3 cut(s)	73, 79, 118
FaiI	YATR	5 cut(s)	71, 77, 90, 116, 312
FatI	CATG	3 cut(s)	69, 75, 114
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	4 cut(s)	39, 94, 183, 251
HapII	CCGG	2 cut(s)	147, 305
HgaI	GACGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	73, 79, 118
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	213, 334
HinfI	GANTC	2 cut(s)	60, 143
HpaII	CCGG	2 cut(s)	147, 305
HphI	GGTGA	2 cut(s)	145, 241
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	172, 384
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	94, 166, 323
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 100, 342
HpyF3I	CTNAG	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	73, 79, 118
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	5 cut(s)	18, 117, 301, 364, 384
LpnPI	CCDG	6 cut(s)	20, 26, 53, 160, 301, 318
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	2 cut(s)	97, 388
MaeIII	GTNAC	3 cut(s)	30, 151, 409
MalI	GATC	5 cut(s)	20, 119, 303, 366, 386
MboI	GATC	5 cut(s)	18, 117, 301, 364, 384
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	4 cut(s)	198, 245, 257, 355
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	2 cut(s)	54, 137
MmeI	TCCRAC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	2 cut(s)	147, 305
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	72, 100, 342
NdeII	GATC	5 cut(s)	18, 117, 301, 364, 384
NlaIII	CATG	3 cut(s)	73, 79, 118
NlaIV	GGNNCC	3 cut(s)	94, 95, 184
NmeAIII	GCCGAG	2 cut(s)	42, 186
NmuCI	GTSAC	3 cut(s)	30, 151, 409
NspI	RCATGY	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 168
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	2 cut(s)	54, 137
PpsI	GAGTC	2 cut(s)	54, 137
PshAI	GACNNNNGTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	94, 95, 184
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	4 cut(s)	37, 92, 93, 182
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	74
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	5 cut(s)	18, 117, 301, 364, 384
Sau96I	GGNCC	4 cut(s)	37, 92, 93, 182
SchI	GAGTC	2 cut(s)	54, 137
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	97, 388
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	4 cut(s)	198, 245, 257, 355
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	141, 162, 387
TasI	AATT	4 cut(s)	198, 245, 257, 355
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	3 cut(s)	30, 151, 409
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	3 cut(s)	30, 151, 409
TspDTI	ATGAA	1 cut(s)	416
XapI	RAATTY	2 cut(s)	198, 257
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.