Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Reverse (-)

31243405 .. 31243924

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1213900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGTTGAATAAGCCTGAGTGCAAGGTAGAGTTCAACGAGGAAGGGAAAGTTATCGGTGTCACATCTGAAGGGGAAACTGCTAAGTGCAAAAAAGTTGTTAGGAAGGTTGGTAAGGTTGCAAGAGTTATTGCCATCATGAGCCACCCAATTCCAAACACCAATGAATCTCACTCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

60

Amino Acids

6.45

Weight (kDa)

9.1

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	1 - 59	4e-16	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	7, 34
BccI	CCATC	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	15, 81, 172
BtsIMutI	CAGTG	1 cut(s)	180
CciI	TCATGA	1 cut(s)	135
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	2 cut(s)	13, 141
CviKI_1	RGCY	2 cut(s)	13, 141
DdeI	CTNAG	3 cut(s)	15, 81, 172
DraIII	CACNNNGTG	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	87
FaeI	CATG	1 cut(s)	139
FaiI	YATR	1 cut(s)	137
FatI	CATG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	35, 62, 97
HpyCH4V	TGCA	3 cut(s)	21, 87, 119
HpyF3I	CTNAG	3 cut(s)	15, 81, 172
Hsp92II	CATG	1 cut(s)	139
LpnPI	CCDG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	58
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	58
PagI	TCATGA	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	164
SetI	ASST	3 cut(s)	27, 108, 117
SgeI	CNNG	5 cut(s)	26, 34, 49, 132, 148
Sse9I	AATT	1 cut(s)	147
TasI	AATT	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.