Rh6BG201200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002551
Physical Location & Seq
Reverse (-)
37912404 .. 37912697
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG201200.1

Sequence Viewer

Length: 294 bp
ATGGCCCAGGCCGTCAGGCGCCCAGCGATAGAATACCCAGTCGTCCTCCTCCAGCCCATTTGCAATTTGCAAACACCCAGCGGCACTGCTACAGGAACTGGAGTCTCTCGATCTCTCCTCCACTCTCCGCTTTTCCAGTCGTCCTCGGCTCCTCGGTCCTCCTCCAGTTCTCCACTTCTCTCACTCTCTCACTCTCTCAGAGAACAGATCAAGACATCAAGATTCAAGAATCAAGACATCAAATTCTCTTGCTCTAGCCTCTGGAAATTTGGTGAGCTTGTTCTACAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

10.19

Isoelectric Point (pI)

88.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AciI CCGC 2 cut(s) 81, 128
AcsI RAATTY 2 cut(s) 242, 266
AcyI GRCGYC 1 cut(s) 19
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 2 cut(s) 3, 9
ApoI RAATTY 2 cut(s) 242, 266
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 4, 156
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 156
BanI GGYRCC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 22
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 4, 156
BmiI GGNNCC 2 cut(s) 20, 150
BmrFI CCNGG 1 cut(s) 8
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BpmI CTGGAG 3 cut(s) 35, 120, 148
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 6, 144, 152
Bse1I ACTGG 4 cut(s) 38, 103, 136, 165
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 3 cut(s) 6, 144, 152
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 4 cut(s) 38, 103, 136, 165
BseRI GAGGAG 4 cut(s) 38, 107, 141, 151
BseYI CCCAGC 2 cut(s) 22, 77
BshFI GGCC 2 cut(s) 5, 11
BshNI GGYRCC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 2 cut(s) 5, 11
Bsp143I GATC 2 cut(s) 110, 207
BspACI CCGC 2 cut(s) 81, 128
BspANI GGCC 2 cut(s) 5, 11
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 20, 150
BspT107I GGYRCC 1 cut(s) 18
BsrI ACTGG 4 cut(s) 38, 103, 136, 165
BssECI CCNNGG 3 cut(s) 6, 144, 152
BssMI GATC 2 cut(s) 110, 207
BssNI GRCGYC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 113, 210
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 110, 207
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 5, 11
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 4, 156
CviJI RGCY 6 cut(s) 5, 11, 55, 149, 258, 277
CviKI_1 RGCY 6 cut(s) 5, 11, 55, 149, 258, 277
DdeI CTNAG 1 cut(s) 197
DinI GGCGCC 1 cut(s) 20
DpnI GATC 2 cut(s) 112, 209
DpnII GATC 2 cut(s) 110, 207
Eco47I GGWCC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 20
EheI GGCGCC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 82
GsaI CCCAGC 2 cut(s) 26, 81
GsuI CTGGAG 3 cut(s) 35, 120, 148
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 2 cut(s) 5, 11
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 19
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 3 cut(s) 102, 222, 229
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 6 cut(s) 108, 211, 219, 226, 233, 262
HpyCH4V TGCA 2 cut(s) 63, 70
HpyF3I CTNAG 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 19
HspAI GCGC 1 cut(s) 19
KasI GGCGCC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 110, 207
LmnI GCTCC 1 cut(s) 154
MaeI CTAG 1 cut(s) 255
MalI GATC 2 cut(s) 112, 209
MboI GATC 2 cut(s) 110, 207
MluCI AATT 3 cut(s) 64, 242, 266
Mly113I GGCGCC 1 cut(s) 19
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 8 cut(s) 56, 59, 128, 154, 162, 169, 172, 269
MspA1I CMGCKG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
NarI GGCGCC 1 cut(s) 19
NdeII GATC 2 cut(s) 110, 207
NlaIV GGNNCC 2 cut(s) 20, 150
NmeAIII GCCGAG 1 cut(s) 125
PfeI GAWTC 2 cut(s) 222, 229
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 110
PluTI GGCGCC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 6
PspFI CCCAGC 2 cut(s) 22, 77
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 20, 150
PspPI GGNCC 2 cut(s) 4, 156
PstNI CAGNNNCTG 1 cut(s) 98
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 110, 207
Sau96I GGNCC 2 cut(s) 4, 156
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 8
SetI ASST 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 90
SfoI GGCGCC 1 cut(s) 20
SinI GGWCC 1 cut(s) 156
Sse9I AATT 3 cut(s) 64, 242, 266
SsiI CCGC 2 cut(s) 81, 128
SspDI GGCGCC 1 cut(s) 18
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 109
TaqII GACCGA 1 cut(s) 144
TasI AATT 3 cut(s) 64, 242, 266
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 222, 229
TscAI CASTG 1 cut(s) 91
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 2 cut(s) 242, 266
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.