Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Forward (+)

4757150 .. 4760995

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGACAGAGAGCTGGTCTCAGAGAGAGAAGACCACCGGTACAAACAAAGACTCTAAGCAACAGATTAGCCACTTTATTTTCAGGGAGAGGCGACTAGAGTTGTTTGCAAACTGGAGAGCTAAGGGTGGTGTTTTCTTGATTGGCTACTCCATTTTCAGAAACTTATCCCTTGGAACCTGTAATGACTTGAGGAACCCTTTTGTGGAGCAAGCAGTGCAGTACTGTGTGGCTGCTGCTCGAGCAACACTTGACAAAGACAAGAAGGATTCGTTAGAGAAATTACCATTGCAAGGAAACGCAACACCCTGTAACAAAATAAAGGTAGTCGATCTGCAGATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004631 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006066 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006694 GO:0006696 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019287 GO:0019637 GO:0019693 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046483 GO:0046490 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097384 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

9.55

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	79, 260
AfiI	CCNNNNNNNGG	2 cut(s)	241, 329
AgeI	ACCGGT	1 cut(s)	74
AluBI	AGCT	3 cut(s)	25, 51, 158
AluI	AGCT	3 cut(s)	25, 51, 158
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	34, 60
Ama87I	CYCGRG	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	269, 272
AsiGI	ACCGGT	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	256, 259
BcoDI	GTCTC	2 cut(s)	34, 60
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	371
BisI	GCNGC	2 cut(s)	270, 273
BlsI	GCNGC	2 cut(s)	271, 274
BmcAI	AGTACT	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	214, 233
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	4 cut(s)	14, 46, 40, 72
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 329
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	241, 329
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	256, 259
BsgI	GTGCAG	1 cut(s)	275
BshTI	ACCGGT	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	241, 329
BsmAI	GTCTC	2 cut(s)	34, 60
BsmBI	CGTCTC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	367
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	214, 233
BspMAI	CTGCAG	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	57, 93, 159
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	34, 60
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 278
BstSFI	CTRYAG	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	256, 259
BstV2I	GAAGAC	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	78, 259
CspAI	ACCGGT	1 cut(s)	74
CviJI	RGCY	6 cut(s)	25, 51, 108, 158, 183, 269
CviKI_1	RGCY	6 cut(s)	25, 51, 108, 158, 183, 269
CviQI	GTAC	2 cut(s)	78, 259
DdeI	CTNAG	3 cut(s)	57, 93, 159
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	27
Eco31I	GGTCTC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	34
FaiI	YATR	2 cut(s)	380, 382
Fnu4HI	GCNGC	2 cut(s)	270, 273
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	270, 273
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	2 cut(s)	270, 273
GsuI	CTGGAG	1 cut(s)	172
HapII	CCGG	1 cut(s)	75
HinfI	GANTC	2 cut(s)	89, 305
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	42, 60, 197
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	13, 295
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	146, 256, 328, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 278
HpyF3I	CTNAG	3 cut(s)	57, 93, 159
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	22, 244
LpnPI	CCDG	6 cut(s)	37, 88, 106, 136, 229, 358
Lsp1109I	GCAGC	2 cut(s)	256, 259
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	120, 222
MspI	CCGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	253, 278
NdeII	GATC	1 cut(s)	367
NlaIV	GGNNCC	2 cut(s)	214, 233
PaeR7I	CTCGAG	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	271, 274
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	214, 233
PspXI	VCTCGAGB	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	375
RsaI	GTAC	2 cut(s)	79, 260
RsaNI	GTAC	2 cut(s)	78, 259
SacI	GAGCTC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	270, 273
Sau3AI	GATC	1 cut(s)	367
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	6 cut(s)	18, 27, 53, 160, 218, 363
SfcI	CTRYAG	1 cut(s)	371
Sfr274I	CTCGAG	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	226, 276
SmoI	CTYRAG	2 cut(s)	226, 276
Sse9I	AATT	1 cut(s)	317
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	277, 366
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	2 cut(s)	269, 272
TspRI	CASTG	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	276
XspI	CTAG	1 cut(s)	134
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.