Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Reverse (-)

29342966 .. 29345172

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTGACAAGCAATGGAAGGATTTGCTTCCATCAGAGTGGGTTTAGGTTTTTTAGATTTGGTACTAAAGTTGGTAAACCAGTGAATAAATTGACCAAGAAGCATACTGATGTATTGGGACCTTTTTTAGAAGTACAAAGTATTCAAATCTACGACAAAAAAGAATTTGCTGATAGCGGTCAGCCTTTACATGAAGCAGCAGTTAATCTAGATGATGTGACTATCTGTTTGCCACAGGACGGGTATAAGGATGTACTGAAGTTAGCTGATAACTTTGGGTCATTATTGCCCACATATCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N PH Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

101

Amino Acids

11.4

Weight (kDa)

7.78

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	3 cut(s)	64, 135, 255
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	164
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	3 cut(s)	63, 134, 254
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	2 cut(s)	184, 266
CviKI_1	RGCY	2 cut(s)	184, 266
CviQI	GTAC	3 cut(s)	63, 134, 254
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	119
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	105, 192, 246, 295
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	6, 77
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	6, 77
HpyAV	CCTTC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	194
LpnPI	CCDG	2 cut(s)	93, 221
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	217
MluCI	AATT	2 cut(s)	89, 164
MseI	TTAA	2 cut(s)	204, 304
MslI	CAYNNNNRTG	2 cut(s)	36, 108
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	3 cut(s)	64, 135, 255
RsaNI	GTAC	3 cut(s)	63, 134, 254
RseI	CAYNNNNRTG	2 cut(s)	36, 108
SaqAI	TTAA	2 cut(s)	204, 304
SatI	GCNGC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	119
SetI	ASST	3 cut(s)	50, 124, 268
SgeI	CNNG	7 cut(s)	21, 92, 109, 203, 221, 248, 253
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	36, 108
Sse9I	AATT	2 cut(s)	89, 164
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	209
TasI	AATT	2 cut(s)	89, 164
TatI	WGTACW	2 cut(s)	133, 253
Tru1I	TTAA	2 cut(s)	204, 304
Tru9I	TTAA	2 cut(s)	204, 304
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	208
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.