Rh1AG217500

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002551
Physical Location & Seq
Forward (+)
41432318 .. 41437665
5348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG217500.1

Sequence Viewer

Length: 414 bp
ATGAATTTTTGTGAATTCACAGAGAGTTCAGACCTAGAGAATAGCTTGGAGAAGATCAAGCGCCAGTTTGCTTCCGGTTTCCGTTGGAACTTGCTCCAGGGCCCACTTCTCAAGCGATCCAAGACTTCTGTCGAACTTGATCGGCTTGCACTTTATCTGGATTGTGATATTTGCTTCATCCTCCATGGCATGTTGACAAGCAATGGAAGGATTTGCTTCCATCAGATTGGGTTCAGGGTAGGTGAGCTAACACGACTCTTTCACTTTGTGCTCTTTTTGGCTTCTGATAATCACATCATAGCATATTATGGCATAATTCCATGGAGTCGAAAGTCCATTGGTCACAAATCTCTTTCCAACATAGTTACCGAATATGCCCAATTTCCAACAGCCGCTTCATCACGCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

137

Amino Acids

15.71

Weight (kDa)

8.76

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 393
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 4, 14
AdeI CACNNNGTG 1 cut(s) 268
AjnI CCWGG 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AluBI AGCT 2 cut(s) 45, 247
AluI AGCT 2 cut(s) 45, 247
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 100
ApaI GGGCCC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 4, 14
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 100, 101
AsuHPI GGTGA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 64
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 100, 101
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 98
BoxI GACNNNNGTC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 97, 184, 320
BsaWI WCCGGW 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 97, 184, 320
BseGI GGATG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 75
BsnI GGCC 1 cut(s) 102
Bsp120I GGGCCC 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 104, 273
Bsp143I GATC 3 cut(s) 54, 116, 139
Bsp19I CCATGG 2 cut(s) 184, 320
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 97, 184, 320
BssMI GATC 3 cut(s) 54, 116, 139
BssT1I CCWWGG 2 cut(s) 184, 320
Bst2UI CCWGG 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 147
BstDSI CCRYGG 2 cut(s) 184, 320
BstF5I GGATG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 3 cut(s) 57, 119, 142
BstMBI GATC 3 cut(s) 54, 116, 139
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 193
BstPAI GACNNNNGTC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 227
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 2 cut(s) 184, 320
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 100, 101
CviAII CATG 3 cut(s) 185, 190, 321
CviJI RGCY 6 cut(s) 45, 102, 145, 247, 281, 392
CviKI_1 RGCY 6 cut(s) 45, 102, 145, 247, 281, 392
DpnI GATC 3 cut(s) 56, 118, 141
DpnII GATC 3 cut(s) 54, 116, 139
DraIII CACNNNGTG 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 184, 320
Eco24I GRGCYC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 2 cut(s) 184, 320
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 2 cut(s) 184, 320
FaeI CATG 3 cut(s) 188, 193, 324
FatI CATG 3 cut(s) 184, 189, 320
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 75
HhaI GCGC 1 cut(s) 63
Hin1II CATG 3 cut(s) 188, 193, 324
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 2 cut(s) 255, 325
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 31, 225, 286
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 149
Hsp92II CATG 3 cut(s) 188, 193, 324
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 54, 116, 139
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 77, 83, 88, 110, 143, 220
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 341, 364
MalI GATC 3 cut(s) 56, 118, 141
MboI GATC 3 cut(s) 54, 116, 139
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 2 cut(s) 104, 273
MluCI AATT 4 cut(s) 4, 14, 315, 380
MlyI GAGTC 2 cut(s) 249, 334
MmeI TCCRAC 3 cut(s) 65, 381, 410
MnlI CCTC 1 cut(s) 191
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NcoI CCATGG 2 cut(s) 184, 320
NdeII GATC 3 cut(s) 54, 116, 139
NlaIII CATG 3 cut(s) 188, 193, 324
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 193
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 2 cut(s) 249, 333
PpsI GAGTC 2 cut(s) 249, 333
PshAI GACNNNNGTC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 102
PspOMI GGGCCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 100, 101
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 3 cut(s) 54, 116, 139
Sau96I GGNCC 2 cut(s) 100, 101
SchI GAGTC 2 cut(s) 249, 334
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 2 cut(s) 104, 273
SetI ASST 4 cut(s) 36, 47, 244, 249
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 4 cut(s) 4, 14, 315, 380
SsiI CCGC 1 cut(s) 393
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 2 cut(s) 184, 320
TaqI TCGA 2 cut(s) 132, 328
TasI AATT 4 cut(s) 4, 14, 315, 380
TauI GCSGC 1 cut(s) 395
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 17, 166, 387
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 2 cut(s) 4, 14
XceI RCATGY 1 cut(s) 193
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.