Rh5AG166500

Pleckstrin homology domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002551
Physical Location & Seq
Forward (+)
17975712 .. 17977322
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG166500.1

Sequence Viewer

Length: 303 bp
ATGAATTTTTGTGAATTCACAGAGAGTTTAGACCCACAGAATAGCTTGGAGAAGATTAAGCGCCAGCTTGCTTCCGGTTTCCGTCGGAACTTGCTCCAGGGCCCACTCCTCAAGCGATCCAAGATTTCCCTGCTTCCATACTATGTAGAAATTCATCCTATATTTCCCCATTTGTTTTCCAGTCTATTGAACTTGATCGGCTTGCACTTTATCTGGATTGTGATATTACTTCATCCTCCAAGGCATGTTGACAAGCAATGGAAGGAGTGGGTTCAGGTATACCCAATCAATTCTCTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

100

Amino Acids

11.92

Weight (kDa)

9.46

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 3 cut(s) 4, 14, 150
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 45, 67
AluI AGCT 2 cut(s) 45, 67
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 100
ApaI GGGCCC 1 cut(s) 104
ApoI RAATTY 3 cut(s) 4, 14, 150
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 100, 101
BaeGI GKGCMC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 301
BfoI RGCGCY 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 100, 101
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 97, 239
BsaWI WCCGGW 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 97, 239
BseGI GGATG 2 cut(s) 154, 232
BseMI GCAATG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 75
BsnI GGCC 1 cut(s) 102
Bsp120I GGGCCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 116, 195
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 263
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 97, 239
BssMI GATC 2 cut(s) 116, 195
BssNAI GTATAC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 65, 69, 203
BstF5I GGATG 2 cut(s) 154, 232
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 119, 198
BstMBI GATC 2 cut(s) 116, 195
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 154, 232
Cac8I GCNNGC 3 cut(s) 65, 69, 203
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 100, 101
CviAII CATG 1 cut(s) 245
CviJI RGCY 4 cut(s) 45, 67, 102, 201
CviKI_1 RGCY 4 cut(s) 45, 67, 102, 201
DpnI GATC 2 cut(s) 118, 197
DpnII GATC 2 cut(s) 116, 195
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 248
FaiI YATR 5 cut(s) 139, 144, 161, 246, 280
FatI CATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 279
FokI GGATG 2 cut(s) 141, 219
FriOI GRGCYC 1 cut(s) 104
FspBI CTAG 1 cut(s) 301
GlaI GCGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 75
HhaI GCGC 1 cut(s) 63
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 250, 280
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 250, 280
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 205
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 116, 195
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 8 cut(s) 77, 83, 88, 110, 143, 193, 199, 260
MaeI CTAG 1 cut(s) 301
MalI GATC 2 cut(s) 118, 197
MboI GATC 2 cut(s) 116, 195
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 4 cut(s) 4, 14, 150, 289
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 2 cut(s) 119, 246
MseI TTAA 1 cut(s) 57
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NdeII GATC 2 cut(s) 116, 195
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 102
PspOMI GGGCCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 100, 101
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 2 cut(s) 116, 195
Sau96I GGNCC 2 cut(s) 100, 101
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 104
SetI ASST 3 cut(s) 47, 69, 279
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 4 cut(s) 4, 14, 150, 289
SspMI CTAG 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 239
TasI AATT 4 cut(s) 4, 14, 150, 289
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 3 cut(s) 17, 143, 221
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 3 cut(s) 4, 14, 150
XceI RCATGY 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.