Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Reverse (-)

57218263 .. 57219042

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGGAGGTGGACGAGATGGCTGTTCGACTGGCTGCCTCTCTAGAACTGGCAGATGTTCACAGGCCGGTGGATCTTCGACCGGCTTGTAGTGAAGGTTTACGTTGCTCTCAGAATTATCTGGTGGGGAAATTGTTGACGGCTAGGGCTTTCAACAAGAGATCGTTCATGGGCATGTTCCGGTGTGCATGGCGGTTGAATGGACGAGCTACGGTTGTCTTGGCACCGTATGATGGGGTGGGAGCGATCAAGGATGTCCCGCTCTCTACCTTAACCTTCTGGGTTAAGGTACGTGGCTTGCCACCAGATTTCCATACTGAGCGTTGTTTGAGAAGAATTGGCAGCGCCTTGGGGCGGTACGTGCAAAAAGACACAACAGAATTCGGAGAAGGAAGGATCCGGATCCGAGCAGAGATGGATCTCCTGCAGCTTGTGATTTTCCGGCGGAGCTTCACGGTGGATGATGGGATTGATGTGGATCTAGAGTTTTTCTTTGAAAACCTATATGGCAGATGTAAGGAATGTGGACTGATTACTCATGTGGGTTTACCTTGTGCTGGGACGCCGCTGCCGGCAGCGGCTAGGACTGAGCAATCGCCGGCACGGTGGAATCTTGAAAGGGCTTTGAACCGTGTGGATGTGTCACCTCATGTTGGACCGTCGATGGTGTTTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044877 GO:0046483 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BOP1NT WD40

Protein Analysis

226

Amino Acids

25.27

Weight (kDa)

8.51

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	6 cut(s)	193, 260, 355, 445, 566, 578
AclWI	GGATC	7 cut(s)	81, 391, 397, 404, 410, 426, 486
AcsI	RAATTY	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	563
AfaI	GTAC	2 cut(s)	291, 359
AfiI	CCNNNNNNNGG	4 cut(s)	233, 354, 557, 653
AgsI	TTSAA	5 cut(s)	154, 199, 497, 617, 628
AluBI	AGCT	3 cut(s)	209, 430, 450
AluI	AGCT	3 cut(s)	209, 430, 450
AlwI	GGATC	7 cut(s)	81, 391, 397, 404, 410, 426, 486
Aor13HI	TCCGGA	1 cut(s)	399
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	5 cut(s)	35, 342, 427, 568, 575
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	636
AvaII	GGWCC	1 cut(s)	656
BamHI	GGATCC	2 cut(s)	396, 402
BanI	GGYRCC	1 cut(s)	223
BbvI	GCAGC	5 cut(s)	22, 354, 439, 555, 587
BccI	CCATC	5 cut(s)	13, 227, 409, 458, 658
BceAI	ACGGC	1 cut(s)	156
BfaI	CTAG	4 cut(s)	44, 144, 482, 582
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	7 cut(s)	36, 343, 428, 566, 569, 576, 579
BlsI	GCNGC	7 cut(s)	37, 344, 429, 567, 570, 577, 580
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	3 cut(s)	225, 398, 404
BsaAI	YACGTR	2 cut(s)	293, 361
BsaBI	GATNNNNATC	2 cut(s)	401, 477
BsaHI	GRCGYC	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	2 cut(s)	180, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 354, 557, 653
Bse118I	RCCGGY	4 cut(s)	67, 82, 571, 598
Bse1I	ACTGG	2 cut(s)	36, 54
Bse8I	GATNNNNATC	2 cut(s)	401, 477
BseAI	TCCGGA	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	259, 466, 643
BseJI	GATNNNNATC	2 cut(s)	401, 477
BseLI	CCNNNNNNNGG	4 cut(s)	233, 354, 557, 653
BseMII	CTCAG	3 cut(s)	125, 309, 579
BseNI	ACTGG	2 cut(s)	36, 54
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	22, 354, 439, 555, 587
BseYI	CCCAGC	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	83
BsiSI	CCGG	7 cut(s)	68, 83, 181, 400, 442, 572, 599
BslFI	GGGAC	2 cut(s)	242, 574
BslI	CCNNNNNNNGG	4 cut(s)	233, 354, 557, 653
BsmFI	GGGAC	2 cut(s)	242, 574
BsnI	GGCC	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
BspACI	CCGC	6 cut(s)	193, 260, 355, 445, 566, 578
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	3 cut(s)	124, 310, 580
BspEI	TCCGGA	1 cut(s)	399
BspLI	GGNNCC	3 cut(s)	225, 398, 404
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	7 cut(s)	81, 391, 397, 404, 410, 426, 486
BspT107I	GGYRCC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	262
BsrFI	RCCGGY	4 cut(s)	67, 82, 571, 598
BsrI	ACTGG	2 cut(s)	36, 54
BssAI	RCCGGY	4 cut(s)	67, 82, 571, 598
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
BssNI	GRCGYC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	6 cut(s)	214, 228, 457, 606, 632, 660
BstACI	GRCGYC	1 cut(s)	563
BstBAI	YACGTR	2 cut(s)	293, 361
BstC8I	GCNNGC	3 cut(s)	299, 573, 600
BstDEI	CTNAG	3 cut(s)	111, 318, 588
BstF5I	GGATG	3 cut(s)	259, 466, 643
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	7 cut(s)	76, 164, 249, 399, 405, 421, 481
BstMBI	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	425
BstV1I	GCAGC	5 cut(s)	22, 354, 439, 555, 587
BstX2I	RGATCY	5 cut(s)	73, 396, 402, 418, 478
BstYI	RGATCY	5 cut(s)	73, 396, 402, 418, 478
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	259, 466, 643
Cac8I	GCNNGC	3 cut(s)	299, 573, 600
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	4 cut(s)	67, 82, 571, 598
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	290, 358
CviAII	CATG	5 cut(s)	169, 175, 189, 539, 650
CviQI	GTAC	2 cut(s)	290, 358
DdeI	CTNAG	3 cut(s)	111, 318, 588
DpnI	GATC	7 cut(s)	75, 163, 248, 398, 404, 420, 480
DpnII	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
EciI	GGCGGA	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	172, 178, 192, 542, 653
FaqI	GGGAC	2 cut(s)	242, 574
FatI	CATG	5 cut(s)	168, 174, 188, 538, 649
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	7 cut(s)	36, 343, 428, 566, 569, 576, 579
FokI	GGATG	3 cut(s)	266, 473, 650
Fsp4HI	GCNGC	7 cut(s)	36, 343, 428, 566, 569, 576, 579
FspBI	CTAG	4 cut(s)	44, 144, 482, 582
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	7 cut(s)	36, 343, 428, 566, 569, 576, 579
GsaI	CCCAGC	1 cut(s)	561
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	7 cut(s)	68, 83, 181, 400, 442, 572, 599
HgaI	GACGC	1 cut(s)	571
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	5 cut(s)	172, 178, 192, 542, 653
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	610
HpaII	CCGG	7 cut(s)	68, 83, 181, 400, 442, 572, 599
HphI	GGTGA	1 cut(s)	636
Hpy166II	GTNNAC	6 cut(s)	13, 61, 101, 138, 527, 548
Hpy188I	TCNGA	3 cut(s)	114, 386, 407
Hpy188III	TCNNGA	4 cut(s)	44, 400, 482, 614
Hpy8I	GTNNAC	6 cut(s)	13, 61, 101, 138, 527, 548
Hpy99I	CGWCG	1 cut(s)	664
HpyAV	CCTTC	4 cut(s)	89, 286, 383, 387
HpyCH4III	ACNGT	6 cut(s)	214, 228, 457, 606, 632, 660
HpyCH4IV	ACGT	3 cut(s)	103, 292, 360
HpyCH4V	TGCA	3 cut(s)	188, 364, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	3 cut(s)	111, 318, 588
HpySE526I	ACGT	3 cut(s)	103, 292, 360
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	5 cut(s)	172, 178, 192, 542, 653
HspAI	GCGC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	399
KroI	GCCGGC	2 cut(s)	571, 598
KroNI	GCCGGC	2 cut(s)	573, 600
Kzo9I	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
LmnI	GCTCC	3 cut(s)	242, 447, 674
Lsp1109I	GCAGC	5 cut(s)	22, 354, 439, 555, 587
MaeI	CTAG	4 cut(s)	44, 144, 482, 582
MaeII	ACGT	3 cut(s)	103, 292, 360
MaeIII	GTNAC	1 cut(s)	642
MalI	GATC	7 cut(s)	75, 163, 248, 398, 404, 420, 480
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
MboII	GAAGA	2 cut(s)	68, 345
MflI	RGATCY	5 cut(s)	73, 396, 402, 418, 478
MluCI	AATT	4 cut(s)	115, 131, 336, 380
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	2 cut(s)	49, 657
MroI	TCCGGA	1 cut(s)	399
MroNI	GCCGGC	2 cut(s)	571, 598
MseI	TTAA	2 cut(s)	272, 285
MslI	CAYNNNNRTG	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	568, 578
MspI	CCGG	7 cut(s)	68, 83, 181, 400, 442, 572, 599
MwoI	GCNNNNNNNGC	1 cut(s)	361
NaeI	GCCGGC	2 cut(s)	573, 600
NdeII	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
NgoMIV	GCCGGC	2 cut(s)	571, 598
NlaIII	CATG	5 cut(s)	172, 178, 192, 542, 653
NlaIV	GGNNCC	3 cut(s)	225, 398, 404
NmuCI	GTSAC	1 cut(s)	642
NspI	RCATGY	1 cut(s)	178
PdiI	GCCGGC	2 cut(s)	573, 600
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	7 cut(s)	37, 344, 429, 567, 570, 577, 580
Ppu21I	YACGTR	2 cut(s)	293, 361
PspFI	CCCAGC	1 cut(s)	557
PspN4I	GGNNCC	3 cut(s)	225, 398, 404
PspPI	GGNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	429
PsuI	RGATCY	5 cut(s)	73, 396, 402, 418, 478
RsaI	GTAC	2 cut(s)	291, 359
RsaNI	GTAC	2 cut(s)	290, 358
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	272, 285
SatI	GCNGC	7 cut(s)	36, 343, 428, 566, 569, 576, 579
Sau3AI	GATC	7 cut(s)	73, 161, 246, 396, 402, 418, 478
Sau96I	GGNCC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	115, 131, 336, 380
SsiI	CCGC	6 cut(s)	193, 260, 355, 445, 566, 578
SspMI	CTAG	4 cut(s)	44, 144, 482, 582
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	6 cut(s)	214, 228, 457, 606, 632, 660
TaiI	ACGT	3 cut(s)	106, 295, 363
TaqI	TCGA	3 cut(s)	28, 79, 662
TasI	AATT	4 cut(s)	115, 131, 336, 380
TauI	GCSGC	2 cut(s)	568, 581
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	272, 285
Tru9I	TTAA	2 cut(s)	272, 285
TseFI	GTSAC	1 cut(s)	642
TseI	GCWGC	5 cut(s)	35, 342, 427, 568, 575
Tsp45I	GTSAC	1 cut(s)	642
TspDTI	ATGAA	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	380
XbaI	TCTAGA	2 cut(s)	43, 481
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	4 cut(s)	44, 144, 482, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.