Rh1DG419900

Vacuolar protein sorting-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002551
Physical Location & Seq
Reverse (-)
63457771 .. 63459040
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG419900.1

Sequence Viewer

Length: 441 bp
ATGTTGACAAGCAATGGAAGGATTTGCTTCCATCAGAGTGGGTTCAGGTTTTTTAGATTTGGTACTAAAGTTGGTAAACCAGTGAATAAATTGACCAAGAAGCATACTGATGTATTGGGAGTTTGGGACCTTTTTTTAGAAGTACAAAGTATTCAAATCTACGACAAAAAAGAATTTGCTGATAGCGGTCAGCCTTTACATGAAGCAGTAGTTAATCTAGATGATGTGACTATCTGTTTGCCACAGGACAGGTATAAGGATGTACTGAAGTTAGCTGATAACTTTGGTGAAAGGAAGCAGATATTTGCTTCACAAGTGGAGTTGAGGCATTCGAGCACGGCACAGAATTCTGCTATGGAATCAAAATCACCCTCAATGCCATTGTATAAAGCACAAAGTAGAAATTCTACCCCGCGGCATCGCGCGGGTTCTCATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chorein_N PH Pex24p SHR-BD VPS13 VPS13_C VPS13_mid_rpt Vps62

Protein Analysis

146

Amino Acids

16.57

Weight (kDa)

9.48

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 415, 423, 425
AciI CCGC 4 cut(s) 186, 413, 415, 425
AcsI RAATTY 3 cut(s) 173, 346, 403
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 3 cut(s) 64, 144, 264
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 338
ApoI RAATTY 3 cut(s) 173, 346, 403
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 299, 360
AvaII GGWCC 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 54, 87
Bbv12I GWGCWC 1 cut(s) 338
BccI CCATC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 354
BfaI CTAG 2 cut(s) 218, 439
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 128
BmsI GCATC 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 80
Bsh1236I CGCG 3 cut(s) 415, 423, 425
BsiHKAI GWGCWC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 338
BspACI CCGC 4 cut(s) 186, 413, 415, 425
BspFNI CGCG 3 cut(s) 415, 423, 425
BspLI GGNNCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 413
BstDSI CCRYGG 1 cut(s) 413
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 3 cut(s) 415, 423, 425
BstHHI GCGC 1 cut(s) 425
BstUI CGCG 3 cut(s) 415, 423, 425
BstXI CCANNNNNNTGG 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 413
BtgZI GCGATG 1 cut(s) 404
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 87
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 127
Cfr42I CCGCGG 1 cut(s) 416
Csp6I GTAC 3 cut(s) 63, 143, 263
CviAII CATG 1 cut(s) 200
CviJI RGCY 2 cut(s) 193, 275
CviKI_1 RGCY 2 cut(s) 193, 275
CviQI GTAC 3 cut(s) 63, 143, 263
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 346
FaeI CATG 1 cut(s) 203
FaiI YATR 5 cut(s) 105, 201, 255, 356, 387
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 199
FauI CCCGC 2 cut(s) 418, 420
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 2 cut(s) 218, 439
GlaI GCGC 1 cut(s) 424
GluI GCNGC 1 cut(s) 416
HhaI GCGC 1 cut(s) 425
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 359
HphI GGTGA 2 cut(s) 299, 360
Hpy166II GTNNAC 2 cut(s) 6, 77
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 6, 77
HpyAV CCTTC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 423
KspI CCGCGG 1 cut(s) 416
LpnPI CCDG 4 cut(s) 31, 93, 230, 235
LweI GCATC 1 cut(s) 427
MaeI CTAG 2 cut(s) 218, 439
MaeIII GTNAC 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 4 cut(s) 89, 173, 346, 403
MnlI CCTC 2 cut(s) 318, 382
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 2 cut(s) 36, 108
MspA1I CMGCKG 1 cut(s) 415
Mva1269I GAATGC 1 cut(s) 328
MvnI CGCG 3 cut(s) 415, 423, 425
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 226
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 64, 144, 264
RsaNI GTAC 3 cut(s) 63, 143, 263
RseI CAYNNNNRTG 2 cut(s) 36, 108
SacII CCGCGG 1 cut(s) 416
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 416
Sau96I GGNCC 1 cut(s) 127
SduI GDGCHC 1 cut(s) 338
SetI ASST 4 cut(s) 50, 132, 254, 277
SfaNI GCATC 1 cut(s) 427
Sfr303I CCGCGG 1 cut(s) 416
SgrBI CCGCGG 1 cut(s) 416
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 2 cut(s) 36, 108
Sse9I AATT 4 cut(s) 89, 173, 346, 403
SsiI CCGC 4 cut(s) 186, 413, 415, 425
SspMI CTAG 2 cut(s) 218, 439
TaqI TCGA 1 cut(s) 332
TasI AATT 4 cut(s) 89, 173, 346, 403
TatI WGTACW 2 cut(s) 142, 262
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 3 cut(s) 173, 346, 403
XbaI TCTAGA 1 cut(s) 217
XspI CTAG 2 cut(s) 218, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.