Rh1CG202000

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002551
Physical Location & Seq
Forward (+)
43842969 .. 43844087
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG202000.1

Sequence Viewer

Length: 186 bp
ATGAATTTTTGTGAATTCACAGAGAGTTCAGACCTAGAGAATAGCTTGGAGAAGATCAAGCGCCAGTTTGCTTCCGGTTTCCGTTGGAACTTGCTCCAGGGCCCACTTCTCAAGCGATCCAAGACTGTACAAACAAAGACTCTAAGCAACAGATTAGCCACTTTATTTTCAGGGAGAGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

61

Amino Acids

7.0

Weight (kDa)

9.86

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 4, 14
AfaI GTAC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 100
ApaI GGGCCC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 4, 14
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 100, 101
BaeGI GKGCMC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 35, 184
BfoI RGCGCY 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 100, 101
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 102
Bsp120I GGGCCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 2 cut(s) 54, 116
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 111
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 54, 116
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 57, 119
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 54, 116
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 102
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 100, 101
Csp6I GTAC 1 cut(s) 128
CviJI RGCY 3 cut(s) 45, 102, 158
CviKI_1 RGCY 3 cut(s) 45, 102, 158
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 56, 118
DpnII GATC 2 cut(s) 54, 116
Eco24I GRGCYC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 104
FspBI CTAG 2 cut(s) 35, 184
GlaI GCGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 75
HhaI GCGC 1 cut(s) 63
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 143
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 54, 116
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 5 cut(s) 77, 83, 88, 110, 156
MaeI CTAG 2 cut(s) 35, 184
MalI GATC 2 cut(s) 56, 118
MboI GATC 2 cut(s) 54, 116
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 2 cut(s) 4, 14
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 1 cut(s) 170
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NdeII GATC 2 cut(s) 54, 116
NlaIV GGNNCC 1 cut(s) 102
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 102
PspOMI GGGCCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 100, 101
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
Sau3AI GATC 2 cut(s) 54, 116
Sau96I GGNCC 2 cut(s) 100, 101
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 104
SetI ASST 2 cut(s) 36, 47
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 4, 14
SspMI CTAG 2 cut(s) 35, 184
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 127
TasI AATT 2 cut(s) 4, 14
TatI WGTACW 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 2 cut(s) 4, 14
XspI CTAG 2 cut(s) 35, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.