Rroxscaffold_4G00315600

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002551
Physical Location & Seq
Forward (+)
39929757 .. 39934284
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315600.1

Sequence Viewer

Length: 591 bp
ATGAAGCTTTATGTGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCTCAGGGCTTTATGCAGGCATTTGCACGACTTAGTGAGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAACGCAAGGTGGAGTTCAATGAGGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACTAAAGTTGTCTGTGACCCTTCTTACTTACCCAACAAGGTCAGAAAGGTTGGTAAGGTTGCAAGGGCTATAGCCATAATGAGCCACCCAATTCCAAACACAAATGATTCTCATTCAGTGCAGGTTATCCTGCCACAAAAGCAGCTGGGTCACAGATCAGATATGTGCTCTACTGGACTTGAAAGAATGTATAATTCACGGAATAGAAACTATGGTGGCAAGGTATGGAACACTTACCAGATGAGCAAAACCGCCTCAAAGCTCAAGTCTTTAACAACTCATGTACTCCATTTTCAAAAAGCAAACTTCTTTACTACAACAGTTGTAGATCGTGAAGAATCACGAAACTCAAAGAGACCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

196

Amino Acids

22.15

Weight (kDa)

9.73

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 138 4.5e-61 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AciI CCGC 1 cut(s) 477
AclWI GGATC 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 2 cut(s) 133, 510
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 4 cut(s) 35, 172, 407, 521
AluBI AGCT 4 cut(s) 7, 79, 370, 487
AluI AGCT 4 cut(s) 7, 79, 370, 487
Alw21I GWGCWC 2 cut(s) 227, 395
Alw26I GTCTC 1 cut(s) 574
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 1 cut(s) 49
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 367
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AsuHPI GGTGA 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 227, 395
BbvI GCAGC 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 574
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 574
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 403
Bse21I CCTNAGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 403
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 365
BsiHKAI GWGCWC 2 cut(s) 227, 395
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 574
Bso31I GGTCTC 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 227, 395
Bsp143I GATC 3 cut(s) 41, 380, 553
BspACI CCGC 1 cut(s) 477
BspCNI CTCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 574
BsrI ACTGG 1 cut(s) 403
BssMI GATC 3 cut(s) 41, 380, 553
Bst4CI ACNGT 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 84, 113
BstKTI GATC 3 cut(s) 44, 383, 556
BstMAI GTCTC 1 cut(s) 574
BstMBI GATC 3 cut(s) 41, 380, 553
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
Bsu36I CCTNAGG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 132, 509
CviAII CATG 1 cut(s) 506
CviJI RGCY 8 cut(s) 7, 79, 90, 293, 299, 309, 370, 487
CviKI_1 RGCY 8 cut(s) 7, 79, 90, 293, 299, 309, 370, 487
CviQI GTAC 2 cut(s) 132, 509
DdeI CTNAG 2 cut(s) 84, 113
DpnI GATC 3 cut(s) 43, 382, 555
DpnII GATC 3 cut(s) 41, 380, 553
Eco31I GGTCTC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 84
FaeI CATG 1 cut(s) 509
FatI CATG 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 368
GsaI CCCAGC 1 cut(s) 374
Hin1II CATG 1 cut(s) 509
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 3 cut(s) 17, 332, 563
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 3 cut(s) 205, 269, 385
Hpy188III TCNNGA 2 cut(s) 557, 567
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 3 cut(s) 173, 200, 255
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 6 cut(s) 26, 97, 107, 225, 287, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 2 cut(s) 84, 113
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 1 cut(s) 509
Kzo9I GATC 3 cut(s) 41, 380, 553
LpnPI CCDG 8 cut(s) 71, 83, 165, 332, 356, 368, 384, 476
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 3 cut(s) 196, 239, 374
MalI GATC 3 cut(s) 43, 382, 555
MboI GATC 3 cut(s) 41, 380, 553
MboII GAAGA 1 cut(s) 572
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 2 cut(s) 227, 395
MluCI AATT 2 cut(s) 315, 418
MnlI CCTC 5 cut(s) 32, 93, 112, 169, 490
MseI TTAA 2 cut(s) 144, 497
MspA1I CMGCKG 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 364
NdeII GATC 3 cut(s) 41, 380, 553
NlaIII CATG 1 cut(s) 509
NmuCI GTSAC 3 cut(s) 196, 239, 374
PfeI GAWTC 3 cut(s) 17, 332, 563
PkrI GCNGC 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 370
PsuI RGATCY 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 2 cut(s) 133, 510
RsaNI GTAC 2 cut(s) 132, 509
SaqAI TTAA 2 cut(s) 144, 497
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 3 cut(s) 41, 380, 553
SduI GDGCHC 2 cut(s) 227, 395
SfcI CTRYAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 2 cut(s) 315, 418
SsiI CCGC 1 cut(s) 477
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 1 cut(s) 31
TasI AATT 2 cut(s) 315, 418
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 3 cut(s) 17, 332, 563
Tru1I TTAA 2 cut(s) 144, 497
Tru9I TTAA 2 cut(s) 144, 497
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 3 cut(s) 196, 239, 374
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 3 cut(s) 196, 239, 374
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 1 cut(s) 348
VneI GTGCAC 1 cut(s) 223
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.