Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001844.1

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Reverse (-)

83020 .. 84801

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001844.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgaggttttatactgctgagatagtatctgctgtttcacatcctcacaagtgcgggattgtgaatagtaaacttaagctggaaaatgttctcatggatgctgatgggcacaaatggctatgctcattcccttgcttctgttgcaactattgctgtggatgccttatcagtttgcctgggttgagcaccggcggcgtccaggaggccatcgaagacgtcgtatggtcgtcgttgtcagcgctggccgagcttgggcgagctgcagcagaatccgagcaaaagtcgaccagcaccggcgaggcagttggacgcggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

105

Amino Acids

11.14

Weight (kDa)

5.5

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	54, 192, 312
AcoI	YGGCCR	1 cut(s)	243
AcyI	GRCGYC	2 cut(s)	195, 216
AfeI	AGCGCT	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflII	CTTAAG	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	175, 198
AluBI	AGCT	3 cut(s)	79, 250, 260
AluI	AGCT	3 cut(s)	79, 250, 260
Alw21I	GWGCWC	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	240
AoxI	GGCC	2 cut(s)	204, 243
ApeKI	GCWGC	2 cut(s)	260, 263
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	247, 275
BccI	CCATC	2 cut(s)	98, 215
BciT130I	CCWGG	2 cut(s)	177, 200
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	242
BfrI	CTTAAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	193, 261, 264
BlsI	GCNGC	3 cut(s)	194, 262, 265
Bme1390I	CCNGG	2 cut(s)	177, 200
BmrFI	CCNGG	2 cut(s)	177, 200
BmsI	GCATC	2 cut(s)	88, 149
BpiI	GAAGAC	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	195, 216
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	2 cut(s)	188, 293
BseBI	CCWGG	2 cut(s)	177, 200
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	3 cut(s)	40, 103, 164
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	247, 275
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	206, 245
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	189, 294
BslI	CCNNNNNNNGG	1 cut(s)	252
BsnI	GGCC	2 cut(s)	206, 245
Bsp1286I	GDGCHC	2 cut(s)	111, 188
BspACI	CCGC	3 cut(s)	54, 192, 312
BspANI	GGCC	2 cut(s)	206, 245
BspCNI	CTCAG	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	188, 293
BssAI	RCCGGY	2 cut(s)	188, 293
BssECI	CCNNGG	1 cut(s)	176
BssNI	GRCGYC	2 cut(s)	195, 216
Bst2UI	CCWGG	2 cut(s)	177, 200
BstACI	GRCGYC	2 cut(s)	195, 216
BstAFI	CTTAAG	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	243, 258
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	3 cut(s)	40, 103, 164
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 141, 150, 159, 192, 247
BstNI	CCWGG	2 cut(s)	177, 200
BstSCI	CCNGG	2 cut(s)	175, 198
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	247, 275
BstV2I	GAAGAC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	206, 245
BtsCI	GGATG	3 cut(s)	40, 103, 164
Cac8I	GCNNGC	2 cut(s)	243, 258
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	2 cut(s)	188, 293
CseI	GACGC	1 cut(s)	184
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	6 cut(s)	79, 118, 206, 245, 250, 260
CviKI_1	RGCY	6 cut(s)	79, 118, 206, 245, 250, 260
DdeI	CTNAG	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	175, 198
FaeI	CATG	1 cut(s)	97
FaiI	YATR	4 cut(s)	12, 95, 121, 223
FatI	CATG	1 cut(s)	93
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	3 cut(s)	193, 261, 264
FokI	GGATG	3 cut(s)	27, 110, 171
Fsp4HI	GCNGC	3 cut(s)	193, 261, 264
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	193, 261, 264
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	206, 245
HapII	CCGG	2 cut(s)	189, 294
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	2 cut(s)	195, 216
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	2 cut(s)	189, 294
Hpy166II	GTNNAC	2 cut(s)	71, 285
Hpy188I	TCNGA	1 cut(s)	274
Hpy8I	GTNNAC	2 cut(s)	71, 285
Hpy99I	CGWCG	2 cut(s)	221, 232
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	144, 263
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 141, 150, 159, 192, 247
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	2 cut(s)	195, 216
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	239
LpnPI	CCDG	9 cut(s)	65, 162, 185, 189, 202, 212, 227, 301, 307
Lsp1109I	GCAGC	2 cut(s)	247, 275
LweI	GCATC	2 cut(s)	88, 149
MaeII	ACGT	1 cut(s)	216
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	111, 188
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	3 cut(s)	54, 196, 292
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	2 cut(s)	189, 294
MspR9I	CCNGG	2 cut(s)	177, 200
MvaI	CCWGG	2 cut(s)	177, 200
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	6 cut(s)	115, 141, 150, 159, 192, 247
NlaIII	CATG	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	194, 262, 265
Psp6I	CCWGG	2 cut(s)	175, 198
PspGI	CCWGG	2 cut(s)	175, 198
PstI	CTGCAG	1 cut(s)	265
SalI	GTCGAC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	193, 261, 264
ScrFI	CCNGG	2 cut(s)	177, 200
SduI	GDGCHC	2 cut(s)	111, 188
SetI	ASST	5 cut(s)	8, 81, 219, 252, 262
SfaNI	GCATC	2 cut(s)	88, 149
SfcI	CTRYAG	1 cut(s)	261
SgrAI	CRCCGGYG	2 cut(s)	188, 293
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	3 cut(s)	54, 192, 312
StyD4I	CCNGG	2 cut(s)	175, 198
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	210, 284
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	260, 263
Vha464I	CTTAAG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.