Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Forward (+)

23482835 .. 23509683

Gene Structure 26849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG222200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAGCACATCCTAATTGTAGTAAAGAATTATGGAAAAGCCAAGAGGAAAGCAAAGTCCTTAGCACGCTTTCAAGGAGGATCTCCTTATATCTACCCATTATATGGTCTAGGAGAGCTACCCCAGGCATTTGCAAGGCTGAGTGCTGTTTATGGGGGCACATACATGCTCAGCAAGCCAGAATGCAAGGTAGAGTTTGATGAAAGTGGAAAGGCATTTGGTGTGACTTCAGAAGGCAAAACTGCAAAGTGCAAAAAAGTTGTATGTGATCCTTCTTATTTGCCTGATAAGGTGACGAAGGTGGGGAAAGTTGCCCGTGCTATATGTATTATGAGCCATCCCATCCCAAACACCAACGATTCTCATTCAGTGCAGGTTATTCTGCCTCAGAAGCAACTTGGACGTAAATCTGATATATCTCGATTACACTTAAGTTCTATAGTCAACCCCCCCCAAAAAAAAAACTGGCTCAAAGACAGTCTGTTGAACTTCATCGGGTTGCATTTTATCTGGATTGTAATATTGCTTCATCCTCCATGGCATGTTGACAAGCAATGGGAGCATTTGCTTCCATCAGAGTGGGTTCAGGTTTTTAGATTTGGTACTAAAGATGGTAAACCAGTGAATAAATTGACCAAGAAGCATATTAATGTATCAGAACCCTTTTTTGGAAATACAAGTGTTCAAATCTACGACAAAAAAGAATTTGCTGATAGCGGTCAGCCTTTACAGGAAGCAGTAGTTAATCTGGATGATGTGACTATCTGTTTGCCACAGGTTCATTTTATTTCGTCTTCGTCAGACGGATATCGGGATGTACTGAAGTTAGCTGATAACTTTGGGTCATTATCACCCACATATCTCTGTAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005092 GO:0005093 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010721 GO:0010769 GO:0010771 GO:0010975 GO:0010977 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030154 GO:0030234 GO:0030695 GO:0031344 GO:0031345 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0035556 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048046 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050770 GO:0050771 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051093 GO:0051128 GO:0051129 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051716 GO:0051960 GO:0051961 GO:0060284 GO:0060341 GO:0060589 GO:0065007 GO:0065009 GO:0070201 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0098772 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

291

Amino Acids

32.64

Weight (kDa)

9.38

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	15 - 157	2.2e-62	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	104
AciI	CCGC	1 cut(s)	717
AclWI	GGATC	2 cut(s)	88, 263
AcsI	RAATTY	2 cut(s)	704, 870
AcuI	CTGAAG	2 cut(s)	213, 842
AfaI	GTAC	2 cut(s)	604, 819
AfiI	CCNNNNNNNGG	2 cut(s)	104, 668
AflII	CTTAAG	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	74, 487, 686
AjnI	CCWGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
AluBI	AGCT	2 cut(s)	118, 830
AluI	AGCT	2 cut(s)	118, 830
AlwI	GGATC	2 cut(s)	88, 263
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	704, 870
ArsI	GACNNNNNNTTYG	2 cut(s)	751, 783
AseI	ATTAAT	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	304, 843
BaeGI	GKGCMC	1 cut(s)	161
BarI	GAAGNNNNNNTAC	2 cut(s)	510, 542
BbsI	GAAGAC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	4 cut(s)	345, 350, 580, 605
BciT130I	CCWGG	1 cut(s)	125
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	5
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	123, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 668
Bse1I	ACTGG	2 cut(s)	470, 620
Bse3DI	GCAATG	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 536
BseGI	GGATG	6 cut(s)	9, 337, 342, 529, 757, 820
BseLI	CCNNNNNNNGG	2 cut(s)	104, 668
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	3 cut(s)	131, 184, 401
BseNI	ACTGG	2 cut(s)	470, 620
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	104, 668
BsmI	GAATGC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	80, 268
Bsp1720I	GCTNAGC	1 cut(s)	170
Bsp19I	CCATGG	1 cut(s)	536
BspACI	CCGC	1 cut(s)	717
BspCNI	CTCAG	3 cut(s)	132, 183, 400
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	88, 263
BspTI	CTTAAG	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	470, 620
BssECI	CCNNGG	2 cut(s)	123, 536
BssMI	GATC	2 cut(s)	80, 268
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	67, 176
BstDEI	CTNAG	4 cut(s)	61, 140, 170, 387
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	6 cut(s)	9, 337, 342, 529, 757, 820
BstKTI	GATC	2 cut(s)	83, 271
BstMBI	GATC	2 cut(s)	80, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 391, 559
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	2 cut(s)	169, 545
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	786
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	6 cut(s)	9, 337, 342, 529, 757, 820
BtsIMutI	CAGTG	2 cut(s)	375, 627
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	67, 176
Csp6I	GTAC	2 cut(s)	603, 818
CviAII	CATG	3 cut(s)	166, 537, 542
CviJI	RGCY	8 cut(s)	41, 118, 139, 178, 336, 469, 724, 830
CviKI_1	RGCY	8 cut(s)	41, 118, 139, 178, 336, 469, 724, 830
CviQI	GTAC	2 cut(s)	603, 818
DdeI	CTNAG	4 cut(s)	61, 140, 170, 387
DpnI	GATC	2 cut(s)	82, 270
DpnII	GATC	2 cut(s)	80, 268
Eco130I	CCWWGG	1 cut(s)	536
Eco32I	GATATC	1 cut(s)	809
Eco57I	CTGAAG	2 cut(s)	213, 842
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	809
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	3 cut(s)	169, 540, 545
FatI	CATG	3 cut(s)	165, 536, 541
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	5 cut(s)	324, 329, 516, 764, 827
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	169, 540, 545
HincII	GTYRAC	2 cut(s)	445, 547
HindII	GTYRAC	2 cut(s)	445, 547
HinfI	GANTC	1 cut(s)	359
HphI	GGTGA	2 cut(s)	304, 843
Hpy166II	GTNNAC	3 cut(s)	445, 547, 617
Hpy188I	TCNGA	6 cut(s)	232, 390, 412, 577, 658, 802
Hpy188III	TCNNGA	4 cut(s)	420, 511, 749, 812
Hpy8I	GTNNAC	3 cut(s)	445, 547, 617
HpyAV	CCTTC	3 cut(s)	227, 282, 292
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	7 cut(s)	4, 134, 186, 245, 252, 373, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 391, 559
HpyF3I	CTNAG	4 cut(s)	61, 140, 170, 387
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	3 cut(s)	169, 540, 545
Kzo9I	GATC	2 cut(s)	80, 268
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	223, 292, 757
MalI	GATC	2 cut(s)	82, 270
MboI	GATC	2 cut(s)	80, 268
MboII	GAAGA	1 cut(s)	786
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	5 cut(s)	15, 28, 629, 704, 870
MnlI	CCTC	4 cut(s)	39, 71, 396, 543
MseI	TTAA	3 cut(s)	431, 648, 744
MslI	CAYNNNNRTG	3 cut(s)	164, 577, 648
MspCI	CTTAAG	1 cut(s)	430
MspR9I	CCNGG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	175, 391, 559
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	2 cut(s)	80, 268
NlaIII	CATG	3 cut(s)	169, 540, 545
NmuCI	GTSAC	3 cut(s)	223, 292, 757
NspI	RCATGY	2 cut(s)	169, 545
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	6
PshBI	ATTAAT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	604, 819
RsaNI	GTAC	2 cut(s)	603, 818
RseI	CAYNNNNRTG	3 cut(s)	164, 577, 648
SaqAI	TTAA	3 cut(s)	431, 648, 744
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	80, 268
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	9 cut(s)	120, 192, 294, 303, 378, 406, 591, 780, 832
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	3 cut(s)	164, 577, 648
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	5 cut(s)	15, 28, 629, 704, 870
SsiI	CCGC	1 cut(s)	717
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	421
TasI	AATT	5 cut(s)	15, 28, 629, 704, 870
TatI	WGTACW	1 cut(s)	817
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	3 cut(s)	431, 648, 744
Tru9I	TTAA	3 cut(s)	431, 648, 744
TscAI	CASTG	2 cut(s)	375, 627
TseFI	GTSAC	3 cut(s)	223, 292, 757
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	3 cut(s)	223, 292, 757
TspDTI	ATGAA	4 cut(s)	216, 481, 518, 770
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	2 cut(s)	375, 627
Van91I	CCANNNNNTGG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	2 cut(s)	704, 870
XceI	RCATGY	2 cut(s)	169, 545
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.