Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Forward (+)

63140300 .. 63140936

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG436400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGGGACTGCAGCCACTGCACTGAGAAAGAATACCCAGTCGTCCTCCTCCAGTCCATTTGCAAACACCCAGCGACAGGAACTGGAGTCTCTGCTCTACTCTCCAGTCGTCCTCGGTCCTCCAGTTCTCCACTTCTCTCAGAGAACAGATCAAGACATCAAGATTCAAGAATCAAGACATCAAATTCTCTTGCTCTGGCCTCTGGAAATCTGGTGAGCTTGTTCTGCAAATCTAAATGTGTGAGCTTGTTCTGCAAATATGCAATTGATTTCAATACTTATCATTTGACAATTTTTGTGCTATCTCGGCCAGGAGCTTGGCCTCATTCGAAAGGCTTAGACCCTCTAACAACAAATTTGGGTCTCCAATCGCACCGTCGAGATTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.32

Weight (kDa)

9.5

Isoelectric Point (pI)

63.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	184, 355
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	168, 274
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	3 cut(s)	219, 246, 317
AluI	AGCT	3 cut(s)	219, 246, 317
Alw26I	GTCTC	2 cut(s)	94, 368
AlwNI	CAGNNNCTG	2 cut(s)	18, 83
AoxI	GGCC	3 cut(s)	198, 308, 320
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	184, 355
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	94, 368
BfmI	CTRYAG	1 cut(s)	10
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpmI	CTGGAG	4 cut(s)	35, 88, 105, 106
Bpu14I	TTCGAA	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	5 cut(s)	38, 52, 88, 105, 123
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	15, 153
BseNI	ACTGG	5 cut(s)	38, 52, 88, 105, 123
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	4
BshFI	GGCC	3 cut(s)	200, 310, 322
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	94, 368
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	200, 310, 322
Bso31I	GGTCTC	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	149
BspANI	GGCC	3 cut(s)	200, 310, 322
BspCNI	CTCAG	2 cut(s)	16, 152
BspMAI	CTGCAG	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	5 cut(s)	38, 52, 88, 105, 123
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	24, 139, 337
BstKTI	GATC	1 cut(s)	152
BstMAI	GTCTC	2 cut(s)	94, 368
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 225, 252, 307
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	200, 310, 322
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 21
CaiI	CAGNNNCTG	2 cut(s)	18, 83
Cfr13I	GGNCC	1 cut(s)	117
CviJI	RGCY	8 cut(s)	15, 200, 219, 246, 310, 317, 322, 336
CviKI_1	RGCY	8 cut(s)	15, 200, 219, 246, 310, 317, 322, 336
DdeI	CTNAG	3 cut(s)	24, 139, 337
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	310
FaiI	YATR	2 cut(s)	261, 391
FaqI	GGGAC	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	13
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	4 cut(s)	35, 88, 105, 106
HaeIII	GGCC	3 cut(s)	200, 310, 322
HinfI	GANTC	4 cut(s)	87, 164, 171, 383
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	6 cut(s)	153, 161, 168, 175, 204, 380
Hpy99I	CGWCG	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	6 cut(s)	12, 21, 63, 228, 255, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 225, 252, 307
HpyF3I	CTNAG	3 cut(s)	24, 139, 337
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	1 cut(s)	24
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	4 cut(s)	184, 264, 291, 355
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	56, 59, 123, 130, 211, 333, 354
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	18, 225, 252, 307
NdeII	GATC	1 cut(s)	149
NmeAIII	GCCGAG	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	329
PfeI	GAWTC	3 cut(s)	164, 171, 383
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	14
PstNI	CAGNNNCTG	2 cut(s)	18, 83
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	3 cut(s)	221, 248, 319
SfcI	CTRYAG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	4 cut(s)	184, 264, 291, 355
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	329, 379
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	4 cut(s)	184, 264, 291, 355
TfiI	GAWTC	3 cut(s)	164, 171, 383
TscAI	CASTG	2 cut(s)	23, 28
TseI	GCWGC	1 cut(s)	12
TspRI	CASTG	2 cut(s)	23, 28
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	2 cut(s)	184, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.