Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Reverse (-)

49832759 .. 49836755

Gene Structure 3997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG381500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGCTTTATGTGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCTCAGGCATTTGCACGACTTAGTGCGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAACGCAAGGTGGAGTTCAATGAAGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACTAAAGTTGTCTGTGACCCTTCTTACTTACCCAACAAGGTCAGAAAGGTTGGTAAGGTTGCAAGGGCTATAGCCATAATGACCCACCCAATTCCAAACACAAATGATTCTCATTCAGTGCAGGTTATCCTGCCACAAAAGCAGCTGGGTCACAGATCAGATATTAAAGTAGCTTCCAATCTTTCTAACGGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005092 GO:0005093 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0008361 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010720 GO:0010721 GO:0010769 GO:0010770 GO:0010771 GO:0010975 GO:0010976 GO:0010977 GO:0016043 GO:0017016 GO:0017137 GO:0019899 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030154 GO:0030234 GO:0030307 GO:0030424 GO:0030516 GO:0030695 GO:0031267 GO:0031344 GO:0031345 GO:0031346 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032535 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0035556 GO:0036477 GO:0040008 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043209 GO:0044297 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045597 GO:0045664 GO:0045665 GO:0045666 GO:0045773 GO:0045927 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050769 GO:0050770 GO:0050771 GO:0050772 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051051 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051223 GO:0051224 GO:0051239 GO:0051240 GO:0051241 GO:0051592 GO:0051716 GO:0051960 GO:0051961 GO:0051962 GO:0055044 GO:0060284 GO:0060341 GO:0060589 GO:0061387 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071840 GO:0090066 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0097458 GO:0098772 GO:0120025 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

136

Amino Acids

14.88

Weight (kDa)

9.39

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	1 - 129	1.1e-64	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	35, 160
AluBI	AGCT	4 cut(s)	7, 79, 358, 386
AluI	AGCT	4 cut(s)	7, 79, 358, 386
Alw21I	GWGCWC	1 cut(s)	215
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse21I	CCTNAGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	41, 368
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	49
BssMI	GATC	2 cut(s)	41, 368
BstDEI	CTNAG	2 cut(s)	84, 101
BstKTI	GATC	2 cut(s)	44, 371
BstMBI	GATC	2 cut(s)	41, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	120
CviJI	RGCY	6 cut(s)	7, 79, 281, 287, 358, 386
CviKI_1	RGCY	6 cut(s)	7, 79, 281, 287, 358, 386
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	84, 101
DpnI	GATC	2 cut(s)	43, 370
DpnII	GATC	2 cut(s)	41, 368
Eco57I	CTGAAG	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	84
FaiI	YATR	8 cut(s)	12, 49, 66, 114, 126, 128, 284, 290
Fnu4HI	GCNGC	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	2 cut(s)	17, 320
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	3 cut(s)	193, 257, 373
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	3 cut(s)	161, 188, 243
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	26, 95, 213, 275, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	84, 101
HpySE526I	ACGT	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	41, 368
LpnPI	CCDG	5 cut(s)	71, 153, 320, 344, 356
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	3 cut(s)	184, 227, 362
MalI	GATC	2 cut(s)	43, 370
MboI	GATC	2 cut(s)	41, 368
MboII	GAAGA	1 cut(s)	176
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	2 cut(s)	32, 93
MseI	TTAA	2 cut(s)	132, 378
MspA1I	CMGCKG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	2 cut(s)	41, 368
NmuCI	GTSAC	3 cut(s)	184, 227, 362
PfeI	GAWTC	2 cut(s)	17, 320
PkrI	GCNGC	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	132, 378
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	2 cut(s)	41, 368
SduI	GDGCHC	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	71
TaiI	ACGT	1 cut(s)	31
TasI	AATT	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	17, 320
Tru1I	TTAA	2 cut(s)	132, 378
Tru9I	TTAA	2 cut(s)	132, 378
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	3 cut(s)	184, 227, 362
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	3 cut(s)	184, 227, 362
TspDTI	ATGAA	2 cut(s)	17, 177
TspRI	CASTG	1 cut(s)	336
VneI	GTGCAC	1 cut(s)	211
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.