Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Forward (+)

56205269 .. 56211192

Gene Structure 5924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG372000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGCCATTTTCATGAAACATCAGAGTTTAAGAAATGGACCGATGTGAAATTGACCTCTCCTCAGCTCTCTAGAGAAAGCATCTACAAATTGTCACTCAAAGATTTAACTCTTGAAAACGTTTCTTCAGGTGACTCGAGGAACCCTTTTGTGGAGCAAGCAGTGCAGTACTGTGTGGCTGCTGCTCGAGCAACACTTGACAAAGACAAGAAGGATTCGTTAGAGAAATTACTATTGCAAGGAAACGCAACACCCTGTAACAAAATAAAGCCTCACCCTCAATTGCCTACACCTAAACGACTCATCATTGGCGGTTTTTCTGGGCAAGCATCTCCAAGAACTGAACGTGCTGTGCTACTCCTTGATGTCGTATCATGTCCTTGCTTCCATTGGAGAGATTTGCCCCAATCTCAGGGTGCTTGTGCTAGAATTGTAGACCAGGAATCACCTGAAGCTTTTAAGATCAACCTGGACAGAATGCTTAATGGTTGTTTATGCTTGGAGAACTTGTACCCTCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004631 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006066 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006694 GO:0006696 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019287 GO:0019637 GO:0019693 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046483 GO:0046490 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097384 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

174

Amino Acids

19.45

Weight (kDa)

8.15

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	1 cut(s)	312
AclI	AACGTT	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	111, 471
AfaI	GTAC	2 cut(s)	170, 512
AfiI	CCNNNNNNNGG	2 cut(s)	151, 412
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	438, 468
AluBI	AGCT	2 cut(s)	67, 455
AluI	AGCT	2 cut(s)	67, 455
Ama87I	CYCGRG	2 cut(s)	136, 186
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	179, 182
AspS9I	GGNCC	2 cut(s)	4, 39
AsuHPI	GGTGA	3 cut(s)	143, 266, 438
AvaI	CYCGRG	2 cut(s)	136, 186
AvaII	GGWCC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	166, 169
BciT130I	CCWGG	2 cut(s)	440, 470
BfaI	CTAG	2 cut(s)	72, 426
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	440, 470
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	2 cut(s)	136, 186
BmgT120I	GGNCC	2 cut(s)	4, 39
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	440, 470
BmsI	GCATC	2 cut(s)	90, 338
Bpu10I	CCTNAGC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 412
BseBI	CCWGG	2 cut(s)	440, 470
BseLI	CCNNNNNNNGG	2 cut(s)	151, 412
BseMII	CTCAG	2 cut(s)	77, 425
BseRI	GAGGAG	2 cut(s)	51, 507
BseXI	GCAGC	2 cut(s)	166, 169
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	6
BsiHKCI	CYCGRG	2 cut(s)	136, 186
BslI	CCNNNNNNNGG	2 cut(s)	151, 412
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	6
BsoBI	CYCGRG	2 cut(s)	136, 186
Bsp143I	GATC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	2 cut(s)	76, 424
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	143
BssMI	GATC	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	440, 470
Bst4CI	ACNGT	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	159, 327
BstDEI	CTNAG	2 cut(s)	63, 411
BstKTI	GATC	1 cut(s)	465
BstMBI	GATC	1 cut(s)	462
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 188
BstNI	CCWGG	2 cut(s)	440, 470
BstSCI	CCNGG	2 cut(s)	438, 468
BstV1I	GCAGC	2 cut(s)	166, 169
BsuRI	GGCC	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	159, 327
CciI	TCATGA	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	4, 39
Csp6I	GTAC	2 cut(s)	169, 511
CviAII	CATG	2 cut(s)	14, 375
CviJI	RGCY	5 cut(s)	6, 67, 179, 271, 455
CviKI_1	RGCY	5 cut(s)	6, 67, 179, 271, 455
CviQI	GTAC	2 cut(s)	169, 511
DdeI	CTNAG	2 cut(s)	63, 411
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	111, 471
Eco88I	CYCGRG	2 cut(s)	136, 186
EcoRII	CCWGG	2 cut(s)	438, 468
FaeI	CATG	2 cut(s)	17, 378
FaiI	YATR	3 cut(s)	15, 376, 496
FatI	CATG	2 cut(s)	13, 374
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	180, 183
Fsp4HI	GCNGC	2 cut(s)	180, 183
FspBI	CTAG	2 cut(s)	72, 426
GluI	GCNGC	2 cut(s)	180, 183
HaeIII	GGCC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	17, 378
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	4 cut(s)	134, 215, 300, 443
HphI	GGTGA	3 cut(s)	143, 266, 438
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	14, 72, 113
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	2 cut(s)	120, 346
HpyCH4V	TGCA	2 cut(s)	166, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 188
HpyF3I	CTNAG	2 cut(s)	63, 411
HpySE526I	ACGT	2 cut(s)	120, 346
Hsp92II	CATG	2 cut(s)	17, 378
Kzo9I	GATC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	9 cut(s)	114, 268, 306, 398, 425, 452, 455, 462, 482
Lsp1109I	GCAGC	2 cut(s)	166, 169
LweI	GCATC	2 cut(s)	90, 338
MaeI	CTAG	2 cut(s)	72, 426
MaeII	ACGT	2 cut(s)	120, 346
MaeIII	GTNAC	3 cut(s)	93, 131, 257
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	1 cut(s)	117
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	5 cut(s)	50, 89, 227, 281, 429
MlyI	GAGTC	2 cut(s)	128, 294
MnlI	CCTC	6 cut(s)	67, 72, 132, 282, 288, 525
MseI	TTAA	5 cut(s)	30, 107, 459, 483, 523
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	440, 470
MunI	CAATTG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	2 cut(s)	440, 470
MwoI	GCNNNNNNNGC	2 cut(s)	163, 188
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	2 cut(s)	17, 378
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	2 cut(s)	93, 131
PaeR7I	CTCGAG	2 cut(s)	136, 186
PagI	TCATGA	1 cut(s)	13
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	215, 443
PkrI	GCNGC	2 cut(s)	181, 184
PleI	GAGTC	2 cut(s)	128, 294
PpsI	GAGTC	2 cut(s)	128, 294
Psp1406I	AACGTT	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	438, 468
PspGI	CCWGG	2 cut(s)	438, 468
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	2 cut(s)	4, 39
PspXI	VCTCGAGB	2 cut(s)	136, 186
RsaI	GTAC	2 cut(s)	170, 512
RsaNI	GTAC	2 cut(s)	169, 511
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	30, 107, 459, 483, 523
SatI	GCNGC	2 cut(s)	180, 183
Sau3AI	GATC	1 cut(s)	462
Sau96I	GGNCC	2 cut(s)	4, 39
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	128, 294
ScrFI	CCNGG	2 cut(s)	440, 470
SetI	ASST	9 cut(s)	59, 69, 123, 133, 295, 349, 451, 457, 471
SfaNI	GCATC	2 cut(s)	90, 338
Sfr274I	CTCGAG	2 cut(s)	136, 186
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	2 cut(s)	136, 186
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	136, 186
SmoI	CTYRAG	2 cut(s)	136, 186
Sse9I	AATT	5 cut(s)	50, 89, 227, 281, 429
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	72, 426
StyD4I	CCNGG	2 cut(s)	438, 468
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	2 cut(s)	123, 349
TaqI	TCGA	2 cut(s)	137, 187
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	5 cut(s)	50, 89, 227, 281, 429
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	215, 443
Tru1I	TTAA	5 cut(s)	30, 107, 459, 483, 523
Tru9I	TTAA	5 cut(s)	30, 107, 459, 483, 523
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	2 cut(s)	93, 131
TseI	GCWGC	2 cut(s)	179, 182
Tsp45I	GTSAC	2 cut(s)	93, 131
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	71
XhoI	CTCGAG	2 cut(s)	136, 186
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	2 cut(s)	72, 426
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.