Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002551

Physical Location & Seq

Genomic Coordinates Forward (+)

23218659 .. 23243933

Gene Structure 25275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG233500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAGCACATCCTAATTGTAGTAAAGGATTATGGAAAAGCCAAGAGGAAAGCAAAGTCCTTAGCACGCTTTCAAGGAGGATCTCCTTATATCTACCCATTATATGGTCTAGGAGAGCTACCCCAGGCATTTGCAAGGCTGAGTGCTGTTTATGGGGGCACATACATGCTCAGCAAGCCAGAGTGCAAGGTAGAGTTTGATGAAAGTGGAAAGGCATTTGGTGTGACTTCAGAAGGAGAAACTGCCAAGTGCAAAAAAGTTGTATGTGATCCTTCTTATTTGCCTGATAAGGTGACGAAGGTGGGGAAAGTTGCCCGTGCTATATGTATTATGAGCCATCCCATCCCAAACACCAACGATTCTCATTCAGTGCAGGTTGTTCTGCCTCAGAAGCAACTTGGACGTAAATCTGATATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005092 GO:0005093 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010721 GO:0010769 GO:0010771 GO:0010975 GO:0010977 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030154 GO:0030234 GO:0030695 GO:0031344 GO:0031345 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0035556 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048046 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050770 GO:0050771 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051093 GO:0051128 GO:0051129 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051716 GO:0051960 GO:0051961 GO:0060284 GO:0060341 GO:0060589 GO:0065007 GO:0065009 GO:0070201 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0098772 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

9.45

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	15 - 139	4.7e-62	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0002551)

Species	Orthologous Gene IDs
malus_domestica	MD10G1213900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0345651 RchiOBHm_Chr2g0110921 RchiOBHm_Chr4g0407041 RchiOBHm_Chr7g0234401
rosa_laevigata	RLG00000034027
rosa_multiflora	Rmu_sc0001844.1_g000018 Rmu_sc0005996.1_g000031
rosa_roxburghii	Rroxscaffold_2G00118530 Rroxscaffold_2G00118840 Rroxscaffold_3G00254040 Rroxscaffold_4G00311990 Rroxscaffold_4G00315600 Rroxscaffold_4G00325350 Rroxscaffold_5G00352340
rosa_rugosa	Rorug02G0250600 Rorug05G0413900
rosa_samantha	Rh1AG217500 Rh1BG388800 Rh1CG202000 Rh1CG402100 Rh1DG419900 Rh1DG448000 Rh2AG059100 Rh2AG222200 Rh2BG233500 Rh2BG264300 Rh2DG230000 Rh2DG230100 Rh2DG436400 Rh2DG439700 Rh4BG153300 Rh5AG166500 Rh5DG372000 Rh6BG073700 Rh6BG201200 Rh7AG381500 Rh7BG117300 Rh7BG475600 Rh7CG401000 Rh7CG461100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	104
AclWI	GGATC	2 cut(s)	88, 263
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
AlwI	GGATC	2 cut(s)	88, 263
ApeKI	GCWGC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	345, 350
BciT130I	CCWGG	1 cut(s)	125
BfaI	CTAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	5
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	3 cut(s)	9, 337, 342
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	3 cut(s)	131, 184, 401
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	80, 268
Bsp1720I	GCTNAGC	1 cut(s)	170
BspCNI	CTCAG	3 cut(s)	132, 183, 400
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	88, 263
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	80, 268
Bst2UI	CCWGG	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	67, 176
BstDEI	CTNAG	4 cut(s)	61, 140, 170, 387
BstF5I	GGATG	3 cut(s)	9, 337, 342
BstKTI	GATC	2 cut(s)	83, 271
BstMBI	GATC	2 cut(s)	80, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 391
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	9, 337, 342
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	67, 176
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	5 cut(s)	41, 118, 139, 178, 336
CviKI_1	RGCY	5 cut(s)	41, 118, 139, 178, 336
DdeI	CTNAG	4 cut(s)	61, 140, 170, 387
DpnI	GATC	2 cut(s)	82, 270
DpnII	GATC	2 cut(s)	80, 268
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	169
FatI	CATG	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	324, 329
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	169
HinfI	GANTC	1 cut(s)	359
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	232, 390, 412
HpyAV	CCTTC	3 cut(s)	227, 282, 292
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	6 cut(s)	4, 134, 186, 252, 373, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 391
HpyF3I	CTNAG	4 cut(s)	61, 140, 170, 387
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	80, 268
LpnPI	CCDG	5 cut(s)	110, 137, 192, 297, 359
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	223, 292
MalI	GATC	2 cut(s)	82, 270
MboI	GATC	2 cut(s)	80, 268
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	3 cut(s)	39, 71, 396
MslI	CAYNNNNRTG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	175, 391
NdeII	GATC	2 cut(s)	80, 268
NlaIII	CATG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	223, 292
NspI	RCATGY	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	164
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	80, 268
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	6 cut(s)	120, 192, 294, 303, 378, 406
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	15
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	406
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	2 cut(s)	223, 292
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	223, 292
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	375
Van91I	CCANNNNNTGG	1 cut(s)	104
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.