Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

26022962 .. 26025017

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1180200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAGCTTGCTCATTGCACAAAAATTGAATGAATGGCATTATCTTTGTAATATTACAATCCGTGTACGGGTGCAGTGCCAACCAGTGCTTGAAAGTCAGTTTAAAGCGATACTTGTCGACAACTACTACAGTCAGCGTAATTTCTGGTTTGAGCTTGACCATGCTCAAACAAGTAAGGTGATATCTTTGTTGGCAACTACGGGAATCACTTCAGGTACATCTGTAGGTTCTTTACCACGGATTAAAAAGTGGAGTCATATGTTTCAAGCTCTTACCTCAGCTCGCACATTAGAATTTCTTCAACCGCTTACTTCAGAGGATTCCACAGAGTTCATTGAAAGAAACGATCCATTCAACGCCCAAATAGATATCATGGAAGCTGAGCAAGCGGAGGAGGAACTTTTATACATGAAACTGCAAGAGTTAGCACTTCAACCTAACCTCAAGAGTAGAGAAGGTGAACACACGTCGTTGTCAGGAGTTTTTGAAGATCATCATGTCATAAATGAATTGACCTTGGAGGACATTGAGAATCCAAGGGAGCCATGGGGTTTGGAGGAGAAGAGGGGAGAAAGTCCGCACTACTCTTCTGAGCAGAAGAGTGGAGAGGGTCCTCAATCCTTGACTGAGTATCAGGCAATCATTGCGAAGTTGATTCAAGAGGTGGAGGAGCTCAAGACTTTTAAGATTCAAGAGGTGGAGGAGGTCAAGGCTTTTAAGACAGAGTTCACCAAACAATCTAAAAAGATTGATTATTTGGAGCATAAACTGGAGCAGGCAGAGGCGGAAATTCGATGCTTAAAATTTTGTCTACGGTTGGAATCTAGGTCTACACCTTCCAAGGCACACACTGATGAGAAGGATACTGAATCATGGAATGTGCTGCATTATGATCCTGATGAGTCAATATATCTAGTTGGTGGATATGATGGCGAATCATGTTTATCGGCATTTGATGCTTATTATCCTTCTGAAGATAAGACGAAACCTCTGAGCCCAATGAGTGCAGTTCGTTCATATGCTTCTGCTGCTCAATCTATGGTAGGTTTTTTGGCAATCTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

356

Amino Acids

40.7

Weight (kDa)

4.92

Isoelectric Point (pI)

58.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	13 - 63	1.2e-10	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	117, 811, 830
AciI	CCGC	4 cut(s)	305, 389, 578, 785
AclWI	GGATC	2 cut(s)	341, 887
AcsI	RAATTY	3 cut(s)	293, 789, 803
AcuI	CTGAAG	3 cut(s)	195, 297, 993
AfaI	GTAC	2 cut(s)	66, 217
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	465
AjiI	CACGTC	1 cut(s)	468
AluBI	AGCT	6 cut(s)	6, 154, 269, 281, 380, 673
AluI	AGCT	6 cut(s)	6, 154, 269, 281, 380, 673
Alw21I	GWGCWC	1 cut(s)	675
AlwI	GGATC	2 cut(s)	341, 887
ApeKI	GCWGC	2 cut(s)	883, 1028
ApoI	RAATTY	3 cut(s)	293, 789, 803
Asp700I	GAANNNNTTC	2 cut(s)	208, 297
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	190, 470, 721
AvaII	GGWCC	1 cut(s)	611
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BanII	GRGCYC	2 cut(s)	675, 998
Bbv12I	GWGCWC	1 cut(s)	675
BbvCI	CCTCAGC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	870, 1015
BccI	CCATC	1 cut(s)	923
BciVI	GTATCC	1 cut(s)	856
BfaI	CTAG	2 cut(s)	825, 914
BfmI	CTRYAG	2 cut(s)	127, 222
BfuI	GTATCC	1 cut(s)	856
BisI	GCNGC	2 cut(s)	884, 1029
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	2 cut(s)	885, 1030
Bme18I	GGWCC	1 cut(s)	611
BmgBI	CACGTC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	2 cut(s)	543, 612
BmsI	GCATC	2 cut(s)	785, 946
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	428, 659
BsaJI	CCNNGG	5 cut(s)	236, 516, 536, 545, 840
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	83, 774
Bse3DI	GCAATG	2 cut(s)	12, 642
BseDI	CCNNGG	5 cut(s)	236, 516, 536, 545, 840
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	12, 642
BseMII	CTCAG	5 cut(s)	291, 372, 582, 618, 983
BseNI	ACTGG	2 cut(s)	83, 774
BseRI	GAGGAG	4 cut(s)	407, 572, 683, 716
BseXI	GCAGC	2 cut(s)	870, 1015
BsgI	GTGCAG	2 cut(s)	92, 1026
BsiHKAI	GWGCWC	1 cut(s)	675
BslI	CCNNNNNNNGG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	675, 998
Bsp143I	GATC	3 cut(s)	346, 490, 892
Bsp1720I	GCTNAGC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	545
BspACI	CCGC	4 cut(s)	305, 389, 578, 785
BspCNI	CTCAG	5 cut(s)	290, 373, 583, 619, 984
BspLI	GGNNCC	2 cut(s)	543, 612
BspPI	GGATC	2 cut(s)	341, 887
BsrDI	GCAATG	2 cut(s)	12, 642
BsrI	ACTGG	2 cut(s)	83, 774
BssECI	CCNNGG	5 cut(s)	236, 516, 536, 545, 840
BssMI	GATC	3 cut(s)	346, 490, 892
BssT1I	CCWWGG	4 cut(s)	516, 536, 545, 840
Bst4CI	ACNGT	2 cut(s)	131, 816
Bst6I	CTCTTC	3 cut(s)	557, 592, 593
BstAPI	GCANNNNNTGC	2 cut(s)	644, 956
BstC8I	GCNNGC	4 cut(s)	8, 283, 387, 777
BstDEI	CTNAG	5 cut(s)	277, 381, 591, 627, 992
BstDSI	CCRYGG	2 cut(s)	236, 545
BstKTI	GATC	3 cut(s)	349, 493, 895
BstMBI	GATC	3 cut(s)	346, 490, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 644, 956, 1028
BstSFI	CTRYAG	2 cut(s)	127, 222
BstV1I	GCAGC	2 cut(s)	870, 1015
BsuI	GTATCC	1 cut(s)	856
BtgI	CCRYGG	2 cut(s)	236, 545
BtrI	CACGTC	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	3 cut(s)	80, 90, 849
Cac8I	GCNNGC	4 cut(s)	8, 283, 387, 777
Cfr13I	GGNCC	1 cut(s)	611
Csp6I	GTAC	2 cut(s)	65, 216
CviAII	CATG	7 cut(s)	161, 373, 409, 497, 546, 873, 939
CviJI	RGCY	9 cut(s)	6, 154, 269, 281, 380, 544, 673, 713, 996
CviKI_1	RGCY	9 cut(s)	6, 154, 269, 281, 380, 544, 673, 713, 996
CviQI	GTAC	2 cut(s)	65, 216
DdeI	CTNAG	5 cut(s)	277, 381, 591, 627, 992
DpnI	GATC	3 cut(s)	348, 492, 894
DpnII	GATC	3 cut(s)	346, 490, 892
DraI	TTTAAA	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	557, 592, 593
EarI	CTCTTC	3 cut(s)	557, 592, 593
EciI	GGCGGA	1 cut(s)	800
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	4 cut(s)	516, 536, 545, 840
Eco24I	GRGCYC	2 cut(s)	675, 998
Eco32I	GATATC	2 cut(s)	183, 370
Eco47I	GGWCC	1 cut(s)	611
Eco53kI	GAGCTC	1 cut(s)	673
Eco57I	CTGAAG	3 cut(s)	195, 297, 993
EcoICRI	GAGCTC	1 cut(s)	673
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRV	GATATC	2 cut(s)	183, 370
EcoT14I	CCWWGG	4 cut(s)	516, 536, 545, 840
EcoT38I	GRGCYC	2 cut(s)	675, 998
ErhI	CCWWGG	4 cut(s)	516, 536, 545, 840
FaeI	CATG	7 cut(s)	164, 376, 412, 500, 549, 876, 942
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	7 cut(s)	160, 372, 408, 496, 545, 872, 938
FauNDI	CATATG	2 cut(s)	258, 1018
FblI	GTMKAC	3 cut(s)	117, 811, 830
Fnu4HI	GCNGC	2 cut(s)	884, 1029
FriOI	GRGCYC	2 cut(s)	675, 998
Fsp4HI	GCNGC	2 cut(s)	884, 1029
FspBI	CTAG	2 cut(s)	825, 914
GluI	GCNGC	2 cut(s)	884, 1029
GsuI	CTGGAG	1 cut(s)	791
Hin1II	CATG	7 cut(s)	164, 376, 412, 500, 549, 876, 942
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HphI	GGTGA	3 cut(s)	190, 470, 721
Hpy166II	GTNNAC	6 cut(s)	65, 118, 461, 729, 812, 831
Hpy188I	TCNGA	4 cut(s)	316, 592, 973, 993
Hpy188III	TCNNGA	6 cut(s)	445, 477, 659, 676, 692, 896
Hpy8I	GTNNAC	6 cut(s)	65, 118, 461, 729, 812, 831
Hpy99I	CGWCG	1 cut(s)	472
HpyAV	CCTTC	4 cut(s)	449, 846, 853, 978
HpyCH4III	ACNGT	2 cut(s)	131, 816
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	5 cut(s)	17, 73, 418, 886, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 644, 956, 1028
HpyF3I	CTNAG	5 cut(s)	277, 381, 591, 627, 992
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	7 cut(s)	164, 376, 412, 500, 549, 876, 942
Kzo9I	GATC	3 cut(s)	346, 490, 892
LmnI	GCTCC	4 cut(s)	541, 670, 760, 772
LpnPI	CCDG	8 cut(s)	96, 130, 198, 462, 620, 755, 761, 909
Lsp1109I	GCAGC	2 cut(s)	870, 1015
LweI	GCATC	2 cut(s)	785, 946
MaeI	CTAG	2 cut(s)	825, 914
MaeII	ACGT	1 cut(s)	467
MalI	GATC	3 cut(s)	348, 492, 894
MboI	GATC	3 cut(s)	346, 490, 892
MboII	GAAGA	6 cut(s)	290, 500, 574, 579, 610, 986
MhlI	GDGCHC	2 cut(s)	675, 998
MluCI	AATT	6 cut(s)	23, 139, 293, 509, 789, 803
MlyI	GAGTC	2 cut(s)	262, 911
MmeI	TCCRAC	1 cut(s)	798
MroXI	GAANNNNTTC	2 cut(s)	208, 297
MseI	TTAA	5 cut(s)	102, 243, 684, 717, 800
MslI	CAYNNNNRTG	1 cut(s)	852
MwoI	GCNNNNNNNGC	4 cut(s)	386, 644, 956, 1028
NcoI	CCATGG	1 cut(s)	545
NdeI	CATATG	2 cut(s)	258, 1018
NdeII	GATC	3 cut(s)	346, 490, 892
NlaIII	CATG	7 cut(s)	164, 376, 412, 500, 549, 876, 942
NlaIV	GGNNCC	2 cut(s)	543, 612
PdmI	GAANNNNTTC	2 cut(s)	208, 297
PfeI	GAWTC	8 cut(s)	204, 320, 532, 655, 688, 821, 869, 935
PkrI	GCNGC	2 cut(s)	885, 1030
PleI	GAGTC	2 cut(s)	261, 910
PpsI	GAGTC	2 cut(s)	261, 910
PpuMI	RGGWCCY	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	543, 612
PspPI	GGNCC	1 cut(s)	611
PspPPI	RGGWCCY	1 cut(s)	611
RsaI	GTAC	2 cut(s)	66, 217
RsaNI	GTAC	2 cut(s)	65, 216
RseI	CAYNNNNRTG	1 cut(s)	852
SacI	GAGCTC	1 cut(s)	675
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	5 cut(s)	102, 243, 684, 717, 800
SatI	GCNGC	2 cut(s)	884, 1029
Sau3AI	GATC	3 cut(s)	346, 490, 892
Sau96I	GGNCC	1 cut(s)	611
SchI	GAGTC	2 cut(s)	262, 911
SduI	GDGCHC	2 cut(s)	675, 998
SfaNI	GCATC	2 cut(s)	785, 946
SfcI	CTRYAG	2 cut(s)	127, 222
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	2 cut(s)	443, 674
SmoI	CTYRAG	2 cut(s)	443, 674
Sse9I	AATT	6 cut(s)	23, 139, 293, 509, 789, 803
SsiI	CCGC	4 cut(s)	305, 389, 578, 785
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	2 cut(s)	825, 914
SstI	GAGCTC	1 cut(s)	675
StyI	CCWWGG	4 cut(s)	516, 536, 545, 840
TaaI	ACNGT	2 cut(s)	131, 816
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	117, 793
TasI	AATT	6 cut(s)	23, 139, 293, 509, 789, 803
TfiI	GAWTC	8 cut(s)	204, 320, 532, 655, 688, 821, 869, 935
Tru1I	TTAA	5 cut(s)	102, 243, 684, 717, 800
Tru9I	TTAA	5 cut(s)	102, 243, 684, 717, 800
TscAI	CASTG	3 cut(s)	80, 90, 856
TseI	GCWGC	2 cut(s)	883, 1028
TspDTI	ATGAA	5 cut(s)	45, 322, 425, 522, 1005
TspGWI	ACGGA	2 cut(s)	50, 253
TspRI	CASTG	3 cut(s)	80, 90, 856
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	3 cut(s)	293, 789, 803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmiI	GTMKAC	3 cut(s)	117, 811, 830
XmnI	GAANNNNTTC	2 cut(s)	208, 297
XspI	CTAG	2 cut(s)	825, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.