Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Forward (+)

88528747 .. 88529443

Gene Structure 697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG556300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCAATTAACAATCCCCCATCCCTCCTCCCAATTTTCTGTTCATCAGTGTTAGCCTGCATTCCATCACATATAATACTGTTTAAGGTACATGACCTTTGTTTCTTATTCAGGTATTCGGATGTGAAAATGGGAGCTGGAAGGAAGACTCAAACCTTTATTTTGCCTCCTAATGCAGACCTGGCACCCTACCCTGTACAAGCAAGACAATTGAGAAGTAATCACCTTGGTGGAGTTATATTTTGGTGCAAGAGCAGCACAATGATGGAGTGTTTATCTAAACAACTCTTTGGTTTACCGGGTCCACACTTTTCATATGTGAAGAATATTAGTCCTGGCTGCTGGGCATGGCCAAATGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

9.02

Isoelectric Point (pI)

62.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	77 - 114	2e-09	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	350
AfaI	GTAC	2 cut(s)	90, 198
AjnI	CCWGG	2 cut(s)	180, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	255, 339
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	267, 326
BccI	CCATC	3 cut(s)	28, 73, 259
BciT130I	CCWGG	2 cut(s)	182, 336
BcnI	CCSGG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	256, 340
BlsI	GCNGC	2 cut(s)	257, 341
Bme1390I	CCNGG	3 cut(s)	182, 300, 336
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	186, 303
BmrFI	CCNGG	3 cut(s)	182, 300, 336
BpiI	GAAGAC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	182, 336
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	20, 127
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	267, 326
BseYI	CCCAGC	1 cut(s)	342
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	196
BspANI	GGCC	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	186, 303
BspT107I	GGYRCC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	182, 336
Bst4CI	ACNGT	1 cut(s)	81
BstAUI	TGTACA	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	20, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 255
BstNI	CCWGG	2 cut(s)	182, 336
BstSCI	CCNGG	3 cut(s)	180, 298, 334
BstV1I	GCAGC	2 cut(s)	267, 326
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	20, 127
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	89, 197
CviAII	CATG	2 cut(s)	92, 348
CviJI	RGCY	4 cut(s)	56, 137, 339, 352
CviKI_1	RGCY	4 cut(s)	56, 137, 339, 352
CviQI	GTAC	2 cut(s)	89, 197
EaeI	YGGCCR	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	180, 334
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	95, 351
FaiI	YATR	7 cut(s)	72, 74, 93, 239, 316, 318, 349
FatI	CATG	2 cut(s)	91, 347
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	256, 340
FokI	GGATG	2 cut(s)	7, 134
Fsp4HI	GCNGC	2 cut(s)	256, 340
GluI	GCNGC	2 cut(s)	256, 340
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	2 cut(s)	95, 351
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	296, 305
Hpy188I	TCNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	296, 305
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	60, 176, 249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 255
Hsp92II	CATG	2 cut(s)	95, 351
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	267, 326
MboII	GAAGA	2 cut(s)	157, 334
MfeI	CAATTG	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	3 cut(s)	6, 33, 209
MluNI	TGGCCA	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	35, 38, 177
Mox20I	TGGCCA	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	352
MseI	TTAA	2 cut(s)	9, 84
MslI	CAYNNNNRTG	2 cut(s)	228, 263
Msp20I	TGGCCA	1 cut(s)	352
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	3 cut(s)	182, 300, 336
MunI	CAATTG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	2 cut(s)	182, 336
MwoI	GCNNNNNNNGC	2 cut(s)	182, 255
NciI	CCSGG	1 cut(s)	300
NdeI	CATATG	1 cut(s)	316
NlaIII	CATG	2 cut(s)	95, 351
NlaIV	GGNNCC	2 cut(s)	186, 303
OliI	CACNNNNGTG	1 cut(s)	228
PctI	GAATGC	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	257, 341
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	180, 334
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	2 cut(s)	180, 334
PspN4I	GGNNCC	2 cut(s)	186, 303
PspPI	GGNCC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	90, 198
RsaNI	GTAC	2 cut(s)	89, 197
RseI	CAYNNNNRTG	2 cut(s)	228, 263
SaqAI	TTAA	2 cut(s)	9, 84
SatI	GCNGC	2 cut(s)	256, 340
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	182, 300, 336
SetI	ASST	7 cut(s)	90, 99, 116, 139, 158, 183, 228
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	228, 263
Sse9I	AATT	3 cut(s)	6, 33, 209
SspI	AATATT	2 cut(s)	328, 362
StyD4I	CCNGG	3 cut(s)	180, 298, 334
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	81
TasI	AATT	3 cut(s)	6, 33, 209
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	9, 84
Tru9I	TTAA	2 cut(s)	9, 84
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	2 cut(s)	255, 339
TspDTI	ATGAA	2 cut(s)	33, 303
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.