Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

4053148 .. 4058875

Gene Structure 5728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0052100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTTCCAATACCATTCTCCAGATTGTCACCTTACTATCCATATTTTTGCCTAATGCAAAGTCAGTTCAGTTCAACTATCCTGCCGTTTTCAACTTTGGTGATTCAAACTCCGACACAGGTGAACTCGCTGCTGGCCTTGGTTTCGAGCTCTCACCTCCATATGGACAGACTTACCCCAAACTTTCACCAATCGGAAGGGCTTGTGATGGCCGTCTTATCGTAGACTTTCTAATGGATGCAATGAACCTGCCATTTCTAAATGCCTACTTAGATTCAGTTGGAATGCCGAGTTTCCGAAGAGGGTGTAACTTTGCTGCTGCAGGGTCTACTATACTTCCAGCTTCTCCAACATCTGTGAGCCCATTTTCATTTGCTGTCCAAGTCTCTCAGTTTCTTAGATTCAAAGCCAGGGTTCTTGAAATTCTAGCTAAAGGTAAGAAATTTGAAAAGTATCTGCCCACAGAAGATTTTTTTGGGAAGGGGCTTTACATGTTTGACATTGGCCAAAATGACATTGCTGGTGAATTTTACTCTAAGACATTAGATCAGATTCTCGCTTCAATTCCAACAATTCTGGCAGAATTCGAAACAGGAATAAAGAGACTATATGATCAAGGGGCTAGGAACTTTTGGATACACAATACAGGTCCTGTGGGATGCTTGACTCAGAATGTTGCCAAATTCGGAACAGACCCCTCAAAGCTTGATGATCAAGGATGTGTTAGCGCACATAACCAAGCTGCCATAACTTTTAACCTGCAGCTTCATGCTCTCACCAAAAAGTTGCAAGGCCAATATACTGATGCAAATGTCACATATGTTGATATCTTCTCTATAAAATCTAACCTCATTGCAAACTATTCAAAAAATGGATTCGAACAACCTATTATGGCTTGCTGTGGATATGGAGGTCCACCTTTGAACTATGACAGTCGGGTTTCTTGTGGATCAACAAGGGTCTTGAATGGCACGTCTGTCACAGCCAAAGGGTGTAGCAATAGTGCTGTGTACGTTAATTGGGATGGAATTCATTACACAGAAGCTGCAAATCAGTTTGTCTCATCAAAGATACTCACCGGAAAGTATTCTGATCCTCCTTTGTCAAACAACATTTCTTTCCTCTCAAGTTCTAAAACCCCAATGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

383

Amino Acids

41.72

Weight (kDa)

7.51

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	30 - 357	4.8e-44	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	258, 768
AccI	GTMKAC	2 cut(s)	225, 329
AclWI	GGATC	2 cut(s)	958, 1088
AcoI	YGGCCR	2 cut(s)	211, 505
AcsI	RAATTY	6 cut(s)	423, 443, 527, 584, 683, 1029
AfaI	GTAC	1 cut(s)	1013
AfiI	CCNNNNNNNGG	2 cut(s)	164, 1146
AflIII	ACRYGT	1 cut(s)	492
AjiI	CACGTC	1 cut(s)	975
AjnI	CCWGG	1 cut(s)	410
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	7 cut(s)	151, 344, 431, 706, 743, 766, 1046
AluI	AGCT	7 cut(s)	151, 344, 431, 706, 743, 766, 1046
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	3 cut(s)	391, 598, 1066
AlwI	GGATC	2 cut(s)	958, 1088
AlwNI	CAGNNNCTG	2 cut(s)	653, 1046
AoxI	GGCC	4 cut(s)	136, 211, 505, 793
ApeKI	GCWGC	6 cut(s)	131, 317, 320, 743, 763, 1046
ApoI	RAATTY	6 cut(s)	423, 443, 527, 584, 683, 1029
Asp700I	GAANNNNTTC	1 cut(s)	1087
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	650, 914
AsuHPI	GGTGA	8 cut(s)	22, 113, 134, 147, 180, 536, 769, 1069
AsuII	TTCGAA	2 cut(s)	588, 879
AvaII	GGWCC	2 cut(s)	650, 914
BalI	TGGCCA	1 cut(s)	507
BanII	GRGCYC	2 cut(s)	153, 365
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	6 cut(s)	118, 304, 307, 730, 775, 1033
BccI	CCATC	2 cut(s)	203, 1019
BceAI	ACGGC	2 cut(s)	71, 198
BciT130I	CCWGG	1 cut(s)	412
BciVI	GTATCC	1 cut(s)	630
BclI	TGATCA	2 cut(s)	613, 712
BcoDI	GTCTC	3 cut(s)	391, 598, 1066
BfaI	CTAG	2 cut(s)	428, 624
BfmI	CTRYAG	2 cut(s)	321, 761
BfuAI	ACCTGC	2 cut(s)	258, 768
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	6 cut(s)	132, 318, 321, 744, 764, 1047
BlsI	GCNGC	6 cut(s)	133, 319, 322, 745, 765, 1048
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	2 cut(s)	650, 914
BmgBI	CACGTC	1 cut(s)	975
BmgT120I	GGNCC	2 cut(s)	650, 914
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	3 cut(s)	229, 650, 796
BpmI	CTGGAG	1 cut(s)	5
Bpu14I	TTCGAA	2 cut(s)	588, 879
BpuEI	CTTGAG	1 cut(s)	1111
BsaJI	CCNNGG	2 cut(s)	139, 411
BsaWI	WCCGGW	1 cut(s)	1079
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 1146
Bse3DI	GCAATG	3 cut(s)	249, 516, 852
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	2 cut(s)	139, 411
BseGI	GGATG	4 cut(s)	244, 665, 725, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	164, 1146
BseMI	GCAATG	3 cut(s)	249, 516, 852
BseMII	CTCAG	2 cut(s)	404, 683
BseXI	GCAGC	6 cut(s)	118, 304, 307, 730, 775, 1033
BshFI	GGCC	4 cut(s)	138, 213, 507, 795
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	1080
BslI	CCNNNNNNNGG	2 cut(s)	164, 1146
BsmAI	GTCTC	3 cut(s)	391, 598, 1066
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	4 cut(s)	138, 213, 507, 795
Bsp119I	TTCGAA	2 cut(s)	588, 879
Bsp1286I	GDGCHC	2 cut(s)	153, 365
Bsp143I	GATC	5 cut(s)	547, 613, 712, 950, 1093
BspANI	GGCC	4 cut(s)	138, 213, 507, 795
BspCNI	CTCAG	2 cut(s)	403, 682
BspMAI	CTGCAG	2 cut(s)	325, 765
BspMI	ACCTGC	2 cut(s)	258, 768
BspPI	GGATC	2 cut(s)	958, 1088
BspT104I	TTCGAA	2 cut(s)	588, 879
BsrDI	GCAATG	3 cut(s)	249, 516, 852
BssECI	CCNNGG	2 cut(s)	139, 411
BssMI	GATC	5 cut(s)	547, 613, 712, 950, 1093
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	935
Bst6I	CTCTTC	1 cut(s)	295
BstBI	TTCGAA	2 cut(s)	588, 879
BstC8I	GCNNGC	2 cut(s)	136, 898
BstDEI	CTNAG	5 cut(s)	271, 390, 398, 537, 669
BstF5I	GGATG	4 cut(s)	244, 665, 725, 1030
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	5 cut(s)	550, 616, 715, 953, 1096
BstMAI	GTCTC	3 cut(s)	391, 598, 1066
BstMBI	GATC	5 cut(s)	547, 613, 712, 950, 1093
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	2 cut(s)	321, 761
BstV1I	GCAGC	6 cut(s)	118, 304, 307, 730, 775, 1033
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	138, 213, 507, 795
BtrI	CACGTC	1 cut(s)	975
BtsCI	GGATG	4 cut(s)	244, 665, 725, 1030
BveI	ACCTGC	2 cut(s)	258, 768
Cac8I	GCNNGC	2 cut(s)	136, 898
CaiI	CAGNNNCTG	2 cut(s)	653, 1046
CfoI	GCGC	1 cut(s)	731
Cfr13I	GGNCC	2 cut(s)	650, 914
Csp6I	GTAC	1 cut(s)	1012
CviAII	CATG	2 cut(s)	493, 770
CviQI	GTAC	1 cut(s)	1012
DdeI	CTNAG	5 cut(s)	271, 390, 398, 537, 669
DpnI	GATC	5 cut(s)	549, 615, 714, 952, 1095
DpnII	GATC	5 cut(s)	547, 613, 712, 950, 1093
EaeI	YGGCCR	2 cut(s)	211, 505
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	2 cut(s)	153, 365
Eco32I	GATATC	1 cut(s)	829
Eco47I	GGWCC	2 cut(s)	650, 914
Eco53kI	GAGCTC	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	650
EcoRI	GAATTC	2 cut(s)	584, 1029
EcoRII	CCWGG	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	2 cut(s)	153, 365
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	496, 773
FatI	CATG	2 cut(s)	492, 769
FauNDI	CATATG	2 cut(s)	163, 820
FbaI	TGATCA	2 cut(s)	613, 712
FblI	GTMKAC	2 cut(s)	225, 329
Fnu4HI	GCNGC	6 cut(s)	132, 318, 321, 744, 764, 1047
FokI	GGATG	4 cut(s)	251, 672, 732, 1037
FriOI	GRGCYC	2 cut(s)	153, 365
Fsp4HI	GCNGC	6 cut(s)	132, 318, 321, 744, 764, 1047
FspBI	CTAG	2 cut(s)	428, 624
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	6 cut(s)	132, 318, 321, 744, 764, 1047
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	4 cut(s)	138, 213, 507, 795
HapII	CCGG	1 cut(s)	1080
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	2 cut(s)	496, 773
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	6 cut(s)	104, 275, 402, 553, 667, 876
HpaII	CCGG	1 cut(s)	1080
HphI	GGTGA	8 cut(s)	22, 113, 134, 147, 180, 536, 769, 1069
Hpy166II	GTNNAC	5 cut(s)	125, 226, 330, 917, 1012
Hpy188I	TCNGA	7 cut(s)	115, 197, 299, 552, 672, 689, 1093
Hpy188III	TCNNGA	3 cut(s)	22, 419, 964
Hpy8I	GTNNAC	5 cut(s)	125, 226, 330, 917, 1012
HpyAV	CCTTC	2 cut(s)	192, 475
HpyCH4III	ACNGT	1 cut(s)	935
HpyCH4IV	ACGT	2 cut(s)	974, 1014
HpyCH4V	TGCA	8 cut(s)	59, 242, 323, 763, 790, 809, 857, 1049
HpyF3I	CTNAG	5 cut(s)	271, 390, 398, 537, 669
HpySE526I	ACGT	2 cut(s)	974, 1014
Hsp92II	CATG	2 cut(s)	496, 773
HspAI	GCGC	1 cut(s)	729
Ksp22I	TGATCA	2 cut(s)	613, 712
Kzo9I	GATC	5 cut(s)	547, 613, 712, 950, 1093
Lsp1109I	GCAGC	6 cut(s)	118, 304, 307, 730, 775, 1033
LweI	GCATC	3 cut(s)	229, 650, 796
MaeI	CTAG	2 cut(s)	428, 624
MaeII	ACGT	2 cut(s)	974, 1014
MaeIII	GTNAC	4 cut(s)	28, 308, 814, 979
MalI	GATC	5 cut(s)	549, 615, 714, 952, 1095
MboI	GATC	5 cut(s)	547, 613, 712, 950, 1093
MboII	GAAGA	3 cut(s)	312, 479, 823
MhlI	GDGCHC	2 cut(s)	153, 365
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	9 cut(s)	423, 443, 527, 564, 573, 584, 683, 1018, 1029
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	4 cut(s)	138, 262, 374, 593
MnlI	CCTC	7 cut(s)	168, 296, 709, 860, 905, 1107, 1133
Mox20I	TGGCCA	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	1087
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	2 cut(s)	756, 1017
Msp20I	TGGCCA	1 cut(s)	507
MspI	CCGG	1 cut(s)	1080
MspR9I	CCNGG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	412
NdeI	CATATG	2 cut(s)	163, 820
NdeII	GATC	5 cut(s)	547, 613, 712, 950, 1093
NlaIII	CATG	2 cut(s)	496, 773
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	3 cut(s)	28, 814, 979
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	2 cut(s)	588, 879
PciI	ACATGT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	1087
PfeI	GAWTC	5 cut(s)	104, 275, 402, 553, 876
PkrI	GCNGC	6 cut(s)	133, 319, 322, 745, 765, 1048
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PpuMI	RGGWCCY	1 cut(s)	650
PscI	ACATGT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspPI	GGNCC	2 cut(s)	650, 914
PspPPI	RGGWCCY	1 cut(s)	650
PstI	CTGCAG	2 cut(s)	325, 765
PstNI	CAGNNNCTG	2 cut(s)	653, 1046
RsaI	GTAC	1 cut(s)	1013
RsaNI	GTAC	1 cut(s)	1012
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	756, 1017
SatI	GCNGC	6 cut(s)	132, 318, 321, 744, 764, 1047
Sau3AI	GATC	5 cut(s)	547, 613, 712, 950, 1093
Sau96I	GGNCC	2 cut(s)	650, 914
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	1 cut(s)	412
SduI	GDGCHC	2 cut(s)	153, 365
SfaNI	GCATC	3 cut(s)	229, 650, 796
SfcI	CTRYAG	2 cut(s)	321, 761
SfuI	TTCGAA	2 cut(s)	588, 879
SinI	GGWCC	2 cut(s)	650, 914
SmlI	CTYRAG	1 cut(s)	1126
SmoI	CTYRAG	1 cut(s)	1126
Sse9I	AATT	9 cut(s)	423, 443, 527, 564, 573, 584, 683, 1018, 1029
SspMI	CTAG	2 cut(s)	428, 624
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	935
TaiI	ACGT	2 cut(s)	977, 1017
TaqI	TCGA	3 cut(s)	147, 588, 879
TasI	AATT	9 cut(s)	423, 443, 527, 564, 573, 584, 683, 1018, 1029
TfiI	GAWTC	5 cut(s)	104, 275, 402, 553, 876
Tru1I	TTAA	2 cut(s)	756, 1017
Tru9I	TTAA	2 cut(s)	756, 1017
TseFI	GTSAC	3 cut(s)	28, 814, 979
TseI	GCWGC	6 cut(s)	131, 317, 320, 743, 763, 1046
Tsp45I	GTSAC	3 cut(s)	28, 814, 979
TspDTI	ATGAA	4 cut(s)	260, 360, 758, 1022
VpaK11BI	GGWCC	2 cut(s)	650, 914
XapI	RAATTY	6 cut(s)	423, 443, 527, 584, 683, 1029
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	225, 329
XmnI	GAANNNNTTC	1 cut(s)	1087
XspI	CTAG	2 cut(s)	428, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.