Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

21191998 .. 21192828

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG101500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCCTGTAGCAGTCAATTGGAATCCACCCGAACCATGGGGTTTAGTGGAGATGAGGGTAGAGAGGTCTCATTCCTGGTCTGAGAAGAAGAGTGGAGGGAGTCCTTGCTCATTGTCTGAGCTGAGTCCTCGATCCTCGTCTGATCAGTCACAAATCGATAAGTTGGTTCAAGAGGTAGAAGAGCTAAAGGCTTTCAAGAATGAACAAACTAAGAAGATAGGCAATTTGGAGTATAAGCTGGAGCAGGCACAGTCTGAGATTAAACAGTTAAAAGATGATATGAAGTTTGAATCTGAGTCTACACCATCCCTTGCACATATTGATGAAAAGCAGGCAGAGTCTGAAATTAAGTTAAAAGACGGTATGAAGTTGGAATCCGAGTCTGTACCCTCCACACGAGAAGGATTATGCATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

139

Amino Acids

15.69

Weight (kDa)

4.98

Isoelectric Point (pI)

65.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	170, 196, 290
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	3 cut(s)	121, 184, 238
AluI	AGCT	3 cut(s)	121, 184, 238
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	341
BauI	CACGAG	1 cut(s)	396
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	5 cut(s)	72, 108, 113, 246, 285
BshVI	ATCGAT	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	131, 142
Bsp19I	CCATGG	1 cut(s)	35
BspCNI	CTCAG	5 cut(s)	73, 109, 114, 247, 286
BspDI	ATCGAT	1 cut(s)	156
BspPI	GGATC	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	131, 142
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	3 cut(s)	252, 267, 362
Bst6I	CTCTTC	2 cut(s)	83, 174
BstC8I	GCNNGC	2 cut(s)	246, 333
BstDEI	CTNAG	6 cut(s)	81, 117, 122, 210, 255, 294
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	305
BstKTI	GATC	2 cut(s)	134, 145
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	131, 142
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	246, 333
CaiI	CAGNNNCTG	1 cut(s)	341
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	1 cut(s)	36
CviJI	RGCY	4 cut(s)	121, 184, 191, 238
CviKI_1	RGCY	4 cut(s)	121, 184, 191, 238
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	6 cut(s)	81, 117, 122, 210, 255, 294
DpnI	GATC	2 cut(s)	133, 144
DpnII	GATC	2 cut(s)	131, 142
Eam1104I	CTCTTC	2 cut(s)	83, 174
EarI	CTCTTC	2 cut(s)	83, 174
Eco130I	CCWWGG	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	39
FaiI	YATR	6 cut(s)	37, 234, 281, 318, 365, 409
FatI	CATG	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	299
FokI	GGATG	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	260
Hin1II	CATG	1 cut(s)	39
HinfI	GANTC	8 cut(s)	22, 100, 124, 290, 296, 338, 374, 380
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	7 cut(s)	82, 118, 142, 256, 295, 343, 379
Hpy188III	TCNNGA	2 cut(s)	170, 196
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	3 cut(s)	252, 267, 362
HpyCH4V	TGCA	2 cut(s)	314, 411
HpyF3I	CTNAG	6 cut(s)	81, 117, 122, 210, 255, 294
Hsp92II	CATG	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	131, 142
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	18, 61, 88, 224, 230, 317
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	2 cut(s)	133, 144
MboI	GATC	2 cut(s)	131, 142
MboII	GAAGA	4 cut(s)	97, 100, 191, 226
MfeI	CAATTG	1 cut(s)	16
MluCI	AATT	3 cut(s)	16, 223, 345
MlyI	GAGTC	5 cut(s)	109, 133, 305, 347, 389
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	48, 57, 89, 138, 145, 166, 400
Mph1103I	ATGCAT	1 cut(s)	413
MseI	TTAA	4 cut(s)	261, 269, 348, 353
MslI	CAYNNNNRTG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	131, 142
NlaIII	CATG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	22, 290, 374
PleI	GAGTC	5 cut(s)	108, 132, 304, 346, 388
PpsI	GAGTC	5 cut(s)	108, 132, 304, 346, 388
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	261, 269, 348, 353
Sau3AI	GATC	2 cut(s)	131, 142
SchI	GAGTC	5 cut(s)	109, 133, 305, 347, 389
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	5 cut(s)	68, 123, 177, 186, 240
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	16, 223, 345
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	3 cut(s)	252, 267, 362
TaqI	TCGA	2 cut(s)	130, 156
TasI	AATT	3 cut(s)	16, 223, 345
TfiI	GAWTC	3 cut(s)	22, 290, 374
Tru1I	TTAA	4 cut(s)	261, 269, 348, 353
Tru9I	TTAA	4 cut(s)	261, 269, 348, 353
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	4 cut(s)	216, 296, 339, 380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.