Rmu_ssc0000193.1_g000005

DCD (Development and cell death) domain protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000193.1
Physical Location & Seq
Forward (+)
18244 .. 20539
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000193.1_g000005.1.cds

Sequence Viewer

Length: 1326 bp
atgggagcgggaaggaaaactgagacctataccctgccttctaatcaagacctggtaccctatgctgtgtctgcaagaaatttgatgaagaatcacctaggtttaccggctccacaccttatatatgtgaagaaagttacacctggcttaccactatttctgttcaactatagtgacaggaagctatatggtatctttgaggctactggtcatggccaaatgaatattgacccatacggatggaccgctgatgggtcagggaggacccaatttcctgcacaggttcggatgcgtgttcggcagcagtgccgaccactgcttgaaagccagtttaaaccaataattgctgataactacttcaatccacagcatttcatgtttgagcttgatcatgttcaaacaagaaatctgctatctctgctagcaccattgacgatttctccaggtaaaccaacaccacagaatccaatgctgagggaaactgattctcaagctcttccatcatctagtacaatacagaaagctgaatcgtgtaagccgcccacttcagaggctgagaatcctactcctctacccaactgggaaaccgattttccagctcttccgactcagaatacaatacagaaaactgaattgttgaaaccacccacttcaggggctgagaatttgaattctgtacccacagtgaactgggaaactgagtttccagctcttccatcacgtaatacattacaaaagaaagctgtattgtgtaaaccagccacttctgtaccacagaatagagtggagctggaaactgatattccaactcttccctcaagtagcacagtagtggaacctgaatggccttttcaacttacttcacaggctgagcatctgaacagttcacatcttaaagggggttcgacatgttctacacctcagaatacagtgaagtgggaagctgattttccagattttccctcaattaacataatacaggaacctgaatggcttgaagcacttatttcagaggctgagtatttgaatagttcaaatctgaaattggattctgtacctttggctggagatgctgtagatagtaaggcagagagtccattctcccagtttgatcagaagagtggagagagttcttgctacttttctgcgcagagtcctggatccatgttctatccggggatcattactaagttgcttctagaggtgcaagagctgaaggcgtctagtactgcacagactgagaagatgagatatttggaggataagctggtggaggcgttgtttgaaattcaacagttaaaagacttgttaatagatggagtctga

Protein Analysis

441

Amino Acids

48.99

Weight (kDa)

5.13

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000666)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01660 AT5G01660 AT5G01660
fragaria_vesca FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis pycom04g14830 pycom12g16990
rosa_chinensis RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata RLG00000024916 RLG00000024917
rosa_multiflora Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1149
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 8
AciI CCGC 3 cut(s) 8, 246, 539
AclWI GGATC 3 cut(s) 1155, 1168, 1187
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 4 cut(s) 79, 664, 670, 1287
AcuI CTGAAG 3 cut(s) 531, 636, 1235
AcyI GRCGYC 1 cut(s) 1220
AfaI GTAC 6 cut(s) 57, 511, 678, 771, 1056, 1228
AfiI CCNNNNNNNGG 4 cut(s) 252, 653, 654, 1064
AflIII ACRYGT 1 cut(s) 908
AjnI CCWGG 4 cut(s) 51, 142, 442, 1156
AleI CACNNNNGTG 1 cut(s) 830
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 1155, 1168, 1187
AlwNI CAGNNNCTG 3 cut(s) 554, 659, 1016
AoxI GGCC 2 cut(s) 214, 845
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 4 cut(s) 79, 664, 670, 1287
Asp718I GGTACC 1 cut(s) 55
AspA2I CCTAGG 1 cut(s) 97
AspLEI GCGC 1 cut(s) 1150
AspS9I GGNCC 2 cut(s) 243, 264
AsuC2I CCSGG 1 cut(s) 1176
AsuHPI GGTGA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 421
AvaII GGWCC 2 cut(s) 243, 264
AvrII CCTAGG 1 cut(s) 97
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BalI TGGCCA 1 cut(s) 216
BamHI GGATCC 1 cut(s) 1160
BanI GGYRCC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 313
BccI CCATC 5 cut(s) 234, 245, 508, 724, 1310
BciT130I CCWGG 4 cut(s) 53, 144, 444, 1158
BclI TGATCA 2 cut(s) 388, 1111
BcnI CCSGG 1 cut(s) 1176
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 5 cut(s) 98, 422, 507, 1199, 1224
BfmI CTRYAG 2 cut(s) 169, 1074
BisI GCNGC 2 cut(s) 302, 539
BlnI CCTAGG 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 870
BlsI GCNGC 2 cut(s) 303, 540
BmcAI AGTACT 1 cut(s) 1228
Bme1390I CCNGG 5 cut(s) 53, 144, 444, 1158, 1176
Bme18I GGWCC 2 cut(s) 243, 264
BmgT120I GGNCC 2 cut(s) 243, 264
BmiI GGNNCC 6 cut(s) 57, 111, 266, 837, 984, 1162
BmrFI CCNGG 5 cut(s) 53, 144, 444, 1158, 1176
BmrI ACTGGG 3 cut(s) 589, 700, 1099
BmsI GCATC 3 cut(s) 279, 883, 1060
BmtI GCTAGC 1 cut(s) 425
BmuI ACTGGG 3 cut(s) 589, 700, 1099
BpmI CTGGAG 2 cut(s) 426, 1086
Bpu10I CCTNAGC 1 cut(s) 473
Bpu1102I GCTNAGC 1 cut(s) 870
BpuEI CTTGAG 2 cut(s) 474, 802
BpuMI CCSGG 1 cut(s) 1176
BsaAI YACGTR 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 1220
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 97, 1175
BsaXI ACNNNNNCTCC 6 cut(s) 424, 454, 1059, 1089, 1265, 1295
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 653, 654, 1064
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 5 cut(s) 211, 328, 584, 695, 1105
BseBI CCWGG 4 cut(s) 53, 144, 444, 1158
BseDI CCNNGG 2 cut(s) 97, 1175
BseGI GGATG 2 cut(s) 245, 294
BseLI CCNNNNNNNGG 4 cut(s) 252, 653, 654, 1064
BseNI ACTGG 5 cut(s) 211, 328, 584, 695, 1105
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 261, 1215
BshFI GGCC 2 cut(s) 216, 847
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 2 cut(s) 107, 1175
BslI CCNNNNNNNGG 4 cut(s) 252, 653, 654, 1064
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 2 cut(s) 216, 847
Bso31I GGTCTC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 388, 1111, 1160, 1179
Bsp1720I GCTNAGC 1 cut(s) 870
BspACI CCGC 3 cut(s) 8, 246, 539
BspANI GGCC 2 cut(s) 216, 847
BspLI GGNNCC 6 cut(s) 57, 111, 266, 837, 984, 1162
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 3 cut(s) 1155, 1168, 1187
BspQI GCTCTTC 3 cut(s) 501, 606, 717
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 5 cut(s) 211, 328, 584, 695, 1105
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 97, 1175
BssMI GATC 4 cut(s) 388, 1111, 1160, 1179
BssNI GRCGYC 1 cut(s) 1220
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 4 cut(s) 53, 144, 444, 1158
Bst4CI ACNGT 5 cut(s) 685, 829, 884, 931, 1296
Bst6I CTCTTC 5 cut(s) 501, 606, 717, 816, 1112
BstACI GRCGYC 1 cut(s) 1220
BstBAI YACGTR 1 cut(s) 722
BstC8I GCNNGC 1 cut(s) 423
BstF5I GGATG 2 cut(s) 245, 294
BstHHI GCGC 1 cut(s) 1150
BstKTI GATC 4 cut(s) 391, 1114, 1163, 1182
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 388, 1111, 1160, 1179
BstMWI GCNNNNNNNGC 4 cut(s) 71, 298, 418, 1070
BstNI CCWGG 4 cut(s) 53, 144, 444, 1158
BstNSI RCATGY 1 cut(s) 912
BstSCI CCNGG 5 cut(s) 51, 142, 442, 1156, 1174
BstSFI CTRYAG 2 cut(s) 169, 1074
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 1160
BstXI CCANNNNNNTGG 1 cut(s) 240
BstYI RGATCY 1 cut(s) 1160
BsuRI GGCC 2 cut(s) 216, 847
BtsCI GGATG 2 cut(s) 245, 294
BtsI GCAGTG 2 cut(s) 311, 314
BtsIMutI CAGTG 4 cut(s) 311, 314, 690, 936
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 3 cut(s) 554, 659, 1016
CfoI GCGC 1 cut(s) 1150
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 243, 264
CseI GACGC 1 cut(s) 1209
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 6 cut(s) 56, 510, 677, 770, 1055, 1227
CviAII CATG 5 cut(s) 212, 376, 392, 909, 1165
CviQI GTAC 6 cut(s) 56, 510, 677, 770, 1055, 1227
DpnI GATC 4 cut(s) 390, 1113, 1162, 1181
DpnII GATC 4 cut(s) 388, 1111, 1160, 1179
DraI TTTAAA 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 5 cut(s) 501, 606, 717, 816, 1112
EarI CTCTTC 5 cut(s) 501, 606, 717, 816, 1112
Eco130I CCWWGG 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 2 cut(s) 243, 264
Eco57I CTGAAG 3 cut(s) 531, 636, 1235
EcoO109I RGGNCCY 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 670
EcoRII CCWGG 4 cut(s) 51, 142, 442, 1156
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 5 cut(s) 215, 379, 395, 912, 1168
FatI CATG 5 cut(s) 211, 375, 391, 908, 1164
FbaI TGATCA 2 cut(s) 388, 1111
Fnu4HI GCNGC 2 cut(s) 302, 539
FokI GGATG 2 cut(s) 252, 301
Fsp4HI GCNGC 2 cut(s) 302, 539
FspBI CTAG 5 cut(s) 98, 422, 507, 1199, 1224
FspI TGCGCA 1 cut(s) 1149
GlaI GCGC 1 cut(s) 1149
GluI GCNGC 2 cut(s) 302, 539
GsuI CTGGAG 2 cut(s) 426, 1086
HaeIII GGCC 2 cut(s) 216, 847
HapII CCGG 2 cut(s) 107, 1175
HgaI GACGC 1 cut(s) 1209
HhaI GCGC 1 cut(s) 1150
Hin1I GRCGYC 1 cut(s) 1220
Hin1II CATG 5 cut(s) 215, 379, 395, 912, 1168
Hin6I GCGC 1 cut(s) 1148
HinP1I GCGC 1 cut(s) 1148
HpaII CCGG 2 cut(s) 107, 1175
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 5 cut(s) 104, 449, 688, 755, 887
Hpy188III TCNNGA 3 cut(s) 47, 953, 1199
Hpy8I GTNNAC 5 cut(s) 104, 449, 688, 755, 887
HpyAV CCTTC 3 cut(s) 6, 48, 1210
HpyCH4III ACNGT 5 cut(s) 685, 829, 884, 931, 1296
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 4 cut(s) 74, 278, 1207, 1232
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 298, 418, 1070
HpySE526I ACGT 1 cut(s) 721
Hsp92I GRCGYC 1 cut(s) 1220
Hsp92II CATG 5 cut(s) 215, 379, 395, 912, 1168
HspAI GCGC 1 cut(s) 1148
KpnI GGTACC 1 cut(s) 59
Ksp22I TGATCA 2 cut(s) 388, 1111
Kzo9I GATC 4 cut(s) 388, 1111, 1160, 1179
LguI GCTCTTC 3 cut(s) 501, 606, 717
LmnI GCTCC 3 cut(s) 5, 115, 787
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 3 cut(s) 279, 883, 1060
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 5 cut(s) 98, 422, 507, 1199, 1224
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 2 cut(s) 136, 173
MalI GATC 4 cut(s) 390, 1113, 1162, 1181
MbiI CCGCTC 1 cut(s) 8
MboI GATC 4 cut(s) 388, 1111, 1160, 1179
MboII GAAGA 8 cut(s) 100, 142, 488, 593, 704, 803, 1129, 1255
MflI RGATCY 1 cut(s) 1160
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 9 cut(s) 79, 269, 342, 632, 664, 670, 966, 1043, 1287
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 3 cut(s) 601, 1102, 1162
MmeI TCCRAC 2 cut(s) 629, 830
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MseI TTAA 5 cut(s) 333, 894, 969, 1298, 1310
MslI CAYNNNNRTG 2 cut(s) 238, 830
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 107, 1175
MspR9I CCNGG 5 cut(s) 53, 144, 444, 1158, 1176
MssI GTTTAAAC 1 cut(s) 334
MvaI CCWGG 4 cut(s) 53, 144, 444, 1158
MwoI GCNNNNNNNGC 4 cut(s) 71, 298, 418, 1070
NciI CCSGG 1 cut(s) 1176
NdeII GATC 4 cut(s) 388, 1111, 1160, 1179
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 5 cut(s) 215, 379, 395, 912, 1168
NlaIV GGNNCC 6 cut(s) 57, 111, 266, 837, 984, 1162
NmuCI GTSAC 1 cut(s) 173
NsbI TGCGCA 1 cut(s) 1149
NspI RCATGY 1 cut(s) 912
OliI CACNNNNGTG 1 cut(s) 830
PciI ACATGT 1 cut(s) 908
PciSI GCTCTTC 3 cut(s) 501, 606, 717
PfeI GAWTC 6 cut(s) 91, 463, 485, 527, 559, 1049
PfoI TCCNGGA 1 cut(s) 1156
PkrI GCNGC 2 cut(s) 303, 540
PleI GAGTC 3 cut(s) 601, 1101, 1161
PmeI GTTTAAAC 1 cut(s) 334
PpsI GAGTC 3 cut(s) 601, 1101, 1161
Ppu21I YACGTR 1 cut(s) 722
PpuMI RGGWCCY 1 cut(s) 264
PscI ACATGT 1 cut(s) 908
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 4 cut(s) 51, 142, 442, 1156
PspGI CCWGG 4 cut(s) 51, 142, 442, 1156
PspN4I GGNNCC 6 cut(s) 57, 111, 266, 837, 984, 1162
PspPI GGNCC 2 cut(s) 243, 264
PspPPI RGGWCCY 1 cut(s) 264
PstNI CAGNNNCTG 3 cut(s) 554, 659, 1016
PsuI RGATCY 1 cut(s) 1160
RsaI GTAC 6 cut(s) 57, 511, 678, 771, 1056, 1228
RsaNI GTAC 6 cut(s) 56, 510, 677, 770, 1055, 1227
RseI CAYNNNNRTG 2 cut(s) 238, 830
SapI GCTCTTC 3 cut(s) 501, 606, 717
SaqAI TTAA 5 cut(s) 333, 894, 969, 1298, 1310
SatI GCNGC 2 cut(s) 302, 539
Sau3AI GATC 4 cut(s) 388, 1111, 1160, 1179
Sau96I GGNCC 2 cut(s) 243, 264
ScaI AGTACT 1 cut(s) 1228
SchI GAGTC 3 cut(s) 601, 1102, 1162
ScrFI CCNGG 5 cut(s) 53, 144, 444, 1158, 1176
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 3 cut(s) 279, 883, 1060
SfcI CTRYAG 2 cut(s) 169, 1074
SinI GGWCC 2 cut(s) 243, 264
SmiMI CAYNNNNRTG 2 cut(s) 238, 830
SmlI CTYRAG 2 cut(s) 489, 817
SmoI CTYRAG 2 cut(s) 489, 817
Sse9I AATT 9 cut(s) 79, 269, 342, 632, 664, 670, 966, 1043, 1287
SsiI CCGC 3 cut(s) 8, 246, 539
SspI AATATT 1 cut(s) 226
SspMI CTAG 5 cut(s) 98, 422, 507, 1199, 1224
StyD4I CCNGG 5 cut(s) 51, 142, 442, 1156, 1174
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 5 cut(s) 685, 829, 884, 931, 1296
TaiI ACGT 1 cut(s) 724
TaqI TCGA 1 cut(s) 905
TasI AATT 9 cut(s) 79, 269, 342, 632, 664, 670, 966, 1043, 1287
TatI WGTACW 2 cut(s) 509, 1226
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 6 cut(s) 91, 463, 485, 527, 559, 1049
Tru1I TTAA 5 cut(s) 333, 894, 969, 1298, 1310
Tru9I TTAA 5 cut(s) 333, 894, 969, 1298, 1310
TscAI CASTG 4 cut(s) 311, 321, 690, 936
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 101, 236, 364
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 4 cut(s) 311, 321, 690, 936
VpaK11BI GGWCC 2 cut(s) 243, 264
XapI RAATTY 4 cut(s) 79, 664, 670, 1287
XbaI TCTAGA 1 cut(s) 1198
XceI RCATGY 1 cut(s) 912
XmaJI CCTAGG 1 cut(s) 97
XspI CTAG 5 cut(s) 98, 422, 507, 1199, 1224
ZrmI AGTACT 1 cut(s) 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.