Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

26040873 .. 26044816

Gene Structure 3944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1180500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGGGCCGGCAGGAAGACACAGACCTTTACTTTATCTTCTTCTCAAGACATGGCAACCTACTCTGCGTCCATGAGGAATTTGCGGCGGAATAGCCTTGGTGGTGTCATCTTCGGTGCCACGAAATTCACAATTGACGAATGTCTATCTAAACAACTATTTGGCTTACCAGCTGCACACTACATGTATGTGAAGAACATTACTCCTGGCTTGCCACTTTTTCTCTTCAACTATTCTGATAGGAAGCTACATGGAATTTTTGAGGCTACTGGCCTTGGACAAATGAATATCAATCCATATGGATGGAGCACTGATGGTTCAGAGAGAACGCAGTATCCTGCGCAGGTTAAGTTCCATACACGGATGCAGTGCCGACCACTGCTTGAAAGCGAGTATAAAGACATCATTGCTGACAACTACTACACCGAGAGTCATTTCTGGTTTGAGCTTGATCACTCGCAAACAAGCAAGCTGACATCTAAGTTTGCATCTGTAAAAGTTGCTCCAAGTAATCCCGTACCACAGATACCTAAGTCATCATCTGTAAATGTTGCTCCAAGTACTTCTGTGCCACAAGGTACGCTGAATTGGAGAAAAGCTTGTTTTCCAGCTCCTCCCTCACATGATACAAAAGAGCAACCTCCGTCTTCTCCTTCACATGACACAAAAGAGAAACGTCCGGCTTATACTTCACATGACACAATAGAGGAACCTGAATGGCTTGAACTGCTTACCTCGGAGACTGAGCATTTGAGCTATTCATGTCCGAATTGGGATGCCCCAATTTTATTTGGAAGATATAATGCATTGAATTCCCAATATGATGTGAAAGAGGCTGAACAAGTGGAGCAGGAACGGGTATACGGAAAACTGAAAGAGTTGGCTCTTCAATATGATCTTAACGGTGAATGTCAAGACATGTCTTTCTCTGGAAATGTTGACGATAGCGCTGTCTCAAATGAAATGACCTGGGAGGACACTGAGGAGTCAATGGCACCGTTGGGTTTAGATGAGAAGAGGCCAGGGAGTTCTCGCTCCTCATTTGAGCAGAAGAGCAGAGAGAGTTCCCGATCCTTCTGTGAGAATCCAATCATAGCCAAGTTGATTGAAGAGGTGGAGGAGCTCAAAGCTTCTAAGAAAGAACAATCTGTGAAGATCGGTTTATTGGAGCACAAGCTGAAGAAGGCGGAGCTTGAAATTCAGCAGTTAAAAGTTTGGTATGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

410

Amino Acids

46.26

Weight (kDa)

5.52

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	34 - 161	1.4e-48	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	2 cut(s)	116, 994
AccI	GTMKAC	1 cut(s)	861
AciI	CCGC	3 cut(s)	85, 88, 1187
AclWI	GGATC	1 cut(s)	1065
AcsI	RAATTY	5 cut(s)	79, 125, 255, 811, 1197
AcuI	CTGAAG	1 cut(s)	1199
AfaI	GTAC	3 cut(s)	519, 562, 580
AfeI	AGCGCT	1 cut(s)	949
AflIII	ACRYGT	2 cut(s)	183, 918
AgsI	TTSAA	7 cut(s)	229, 386, 725, 811, 890, 1109, 1196
AjnI	CCWGG	3 cut(s)	205, 968, 1021
AloI	GAACNNNNNNTCC	2 cut(s)	319, 351
Alw21I	GWGCWC	3 cut(s)	311, 1125, 1173
Alw26I	GTCTC	2 cut(s)	734, 958
AlwI	GGATC	1 cut(s)	1065
Aor51HI	AGCGCT	1 cut(s)	949
AoxI	GGCC	3 cut(s)	6, 271, 1019
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	5 cut(s)	79, 125, 255, 811, 1197
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
AspLEI	GCGC	2 cut(s)	343, 950
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	917
BaeI	ACNNNNGTAYC	2 cut(s)	518, 551
BanI	GGYRCC	2 cut(s)	116, 994
BanII	GRGCYC	1 cut(s)	1125
BbsI	GAAGAC	2 cut(s)	23, 639
Bbv12I	GWGCWC	3 cut(s)	311, 1125, 1173
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	297, 308
BciT130I	CCWGG	3 cut(s)	207, 970, 1023
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	734, 958
BfoI	RGCGCY	1 cut(s)	951
BfuAI	ACCTGC	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	2 cut(s)	86, 174
BlsI	GCNGC	2 cut(s)	87, 175
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	3 cut(s)	207, 970, 1023
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	4 cut(s)	7, 118, 711, 996
BmrFI	CCNGG	3 cut(s)	207, 970, 1023
BmsI	GCATC	3 cut(s)	354, 497, 766
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	2 cut(s)	23, 639
BpuEI	CTTGAG	1 cut(s)	30
BsaJI	CCNNGG	5 cut(s)	97, 274, 735, 969, 1022
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	3 cut(s)	207, 970, 1023
BseDI	CCNNGG	5 cut(s)	97, 274, 735, 969, 1022
BseGI	GGATG	3 cut(s)	308, 369, 781
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	735, 972
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	4 cut(s)	603, 998, 1027, 1133
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	3 cut(s)	8, 273, 1021
BshNI	GGYRCC	2 cut(s)	116, 994
BsiHKAI	GWGCWC	3 cut(s)	311, 1125, 1173
BsiSI	CCGG	2 cut(s)	9, 680
BsmAI	GTCTC	2 cut(s)	734, 958
BsnI	GGCC	3 cut(s)	8, 273, 1021
Bsp1286I	GDGCHC	3 cut(s)	311, 1125, 1173
Bsp143I	GATC	4 cut(s)	451, 895, 1070, 1155
BspACI	CCGC	3 cut(s)	85, 88, 1187
BspANI	GGCC	3 cut(s)	8, 273, 1021
BspCNI	CTCAG	2 cut(s)	736, 973
BspLI	GGNNCC	4 cut(s)	7, 118, 711, 996
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	1065
BspQI	GCTCTTC	2 cut(s)	891, 1046
BspT107I	GGYRCC	2 cut(s)	116, 994
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	5 cut(s)	97, 274, 735, 969, 1022
BssMI	GATC	4 cut(s)	451, 895, 1070, 1155
BssNAI	GTATAC	1 cut(s)	862
BssT1I	CCWWGG	2 cut(s)	97, 274
Bst1107I	GTATAC	1 cut(s)	862
Bst2UI	CCWGG	3 cut(s)	207, 970, 1023
Bst4CI	ACNGT	2 cut(s)	905, 999
Bst6I	CTCTTC	5 cut(s)	230, 891, 1010, 1046, 1104
BstC8I	GCNNGC	3 cut(s)	10, 212, 470
BstDEI	CTNAG	5 cut(s)	480, 531, 744, 981, 1134
BstF5I	GGATG	3 cut(s)	308, 369, 781
BstH2I	RGCGCY	1 cut(s)	951
BstHHI	GCGC	2 cut(s)	343, 950
BstKTI	GATC	4 cut(s)	454, 898, 1073, 1158
BstMAI	GTCTC	2 cut(s)	734, 958
BstMBI	GATC	4 cut(s)	451, 895, 1070, 1155
BstMWI	GCNNNNNNNGC	1 cut(s)	727
BstNI	CCWGG	3 cut(s)	207, 970, 1023
BstNSI	RCATGY	2 cut(s)	187, 922
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	205, 968, 1021
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	23, 639
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstZ17I	GTATAC	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	8, 273, 1021
BtsCI	GGATG	3 cut(s)	308, 369, 781
BtsI	GCAGTG	2 cut(s)	374, 377
BtsIMutI	CAGTG	4 cut(s)	309, 374, 377, 978
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	10, 212, 470
CfoI	GCGC	2 cut(s)	343, 950
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	518, 561, 579
CviAII	CATG	9 cut(s)	52, 73, 184, 251, 623, 659, 695, 762, 919
CviQI	GTAC	3 cut(s)	518, 561, 579
DdeI	CTNAG	5 cut(s)	480, 531, 744, 981, 1134
DpnI	GATC	4 cut(s)	453, 897, 1072, 1157
DpnII	GATC	4 cut(s)	451, 895, 1070, 1155
Eam1104I	CTCTTC	5 cut(s)	230, 891, 1010, 1046, 1104
EarI	CTCTTC	5 cut(s)	230, 891, 1010, 1046, 1104
EciI	GGCGGA	2 cut(s)	103, 1202
Ecl136II	GAGCTC	1 cut(s)	1123
Eco130I	CCWWGG	2 cut(s)	97, 274
Eco24I	GRGCYC	1 cut(s)	1125
Eco47III	AGCGCT	1 cut(s)	949
Eco53kI	GAGCTC	1 cut(s)	1123
Eco57I	CTGAAG	1 cut(s)	1199
EcoICRI	GAGCTC	1 cut(s)	1123
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	3 cut(s)	205, 968, 1021
EcoT14I	CCWWGG	2 cut(s)	97, 274
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	1125
ErhI	CCWWGG	2 cut(s)	97, 274
FaeI	CATG	9 cut(s)	55, 76, 187, 254, 626, 662, 698, 765, 922
FatI	CATG	9 cut(s)	51, 72, 183, 250, 622, 658, 694, 761, 918
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	86, 174
FokI	GGATG	3 cut(s)	315, 376, 788
FriOI	GRGCYC	1 cut(s)	1125
Fsp4HI	GCNGC	2 cut(s)	86, 174
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	2 cut(s)	342, 949
GluI	GCNGC	2 cut(s)	86, 174
HaeII	RGCGCY	1 cut(s)	951
HaeIII	GGCC	3 cut(s)	8, 273, 1021
HapII	CCGG	2 cut(s)	9, 680
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	343, 950
Hin1II	CATG	9 cut(s)	55, 76, 187, 254, 626, 662, 698, 765, 922
Hin6I	GCGC	2 cut(s)	341, 948
HinP1I	GCGC	2 cut(s)	341, 948
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HindIII	AAGCTT	2 cut(s)	597, 1128
HinfI	GANTC	3 cut(s)	430, 986, 1084
HpaII	CCGG	2 cut(s)	9, 680
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	2 cut(s)	862, 940
Hpy188I	TCNGA	4 cut(s)	238, 322, 739, 768
Hpy188III	TCNNGA	4 cut(s)	47, 914, 930, 1068
Hpy8I	GTNNAC	2 cut(s)	862, 940
HpyAV	CCTTC	4 cut(s)	663, 1084, 1177, 1217
HpyCH4III	ACNGT	2 cut(s)	905, 999
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	4 cut(s)	176, 367, 488, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	727
HpyF3I	CTNAG	5 cut(s)	480, 531, 744, 981, 1134
HpySE526I	ACGT	1 cut(s)	676
Hsp92II	CATG	9 cut(s)	55, 76, 187, 254, 626, 662, 698, 765, 922
HspAI	GCGC	2 cut(s)	341, 948
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	451, 895, 1070, 1155
LguI	GCTCTTC	2 cut(s)	891, 1046
LmnI	GCTCC	9 cut(s)	306, 508, 559, 616, 847, 1040, 1120, 1168, 1189
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	3 cut(s)	354, 497, 766
MaeII	ACGT	1 cut(s)	676
MalI	GATC	4 cut(s)	453, 897, 1072, 1157
MboI	GATC	4 cut(s)	451, 895, 1070, 1155
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	3 cut(s)	311, 1125, 1173
MluCI	AATT	9 cut(s)	79, 125, 132, 255, 586, 769, 783, 811, 1197
MlyI	GAGTC	2 cut(s)	439, 995
Mph1103I	ATGCAT	1 cut(s)	808
MroNI	GCCGGC	1 cut(s)	8
MseI	TTAA	3 cut(s)	348, 900, 1208
MslI	CAYNNNNRTG	2 cut(s)	188, 301
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	9, 680
MspR9I	CCNGG	3 cut(s)	207, 970, 1023
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	3 cut(s)	207, 970, 1023
MwoI	GCNNNNNNNGC	1 cut(s)	727
NaeI	GCCGGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	4 cut(s)	451, 895, 1070, 1155
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	9 cut(s)	55, 76, 187, 254, 626, 662, 698, 765, 922
NlaIV	GGNNCC	4 cut(s)	7, 118, 711, 996
NsbI	TGCGCA	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	2 cut(s)	187, 922
PciI	ACATGT	2 cut(s)	183, 918
PciSI	GCTCTTC	2 cut(s)	891, 1046
PdiI	GCCGGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	1084
PkrI	GCNGC	2 cut(s)	87, 175
PleI	GAGTC	2 cut(s)	438, 994
PpsI	GAGTC	2 cut(s)	438, 994
PscI	ACATGT	2 cut(s)	183, 918
PshAI	GACNNNNGTC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	1125
Psp6I	CCWGG	3 cut(s)	205, 968, 1021
PspGI	CCWGG	3 cut(s)	205, 968, 1021
PspN4I	GGNNCC	4 cut(s)	7, 118, 711, 996
PspPI	GGNCC	1 cut(s)	6
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	519, 562, 580
RsaNI	GTAC	3 cut(s)	518, 561, 579
RseI	CAYNNNNRTG	2 cut(s)	188, 301
SacI	GAGCTC	1 cut(s)	1125
SapI	GCTCTTC	2 cut(s)	891, 1046
SaqAI	TTAA	3 cut(s)	348, 900, 1208
SatI	GCNGC	2 cut(s)	86, 174
Sau3AI	GATC	4 cut(s)	451, 895, 1070, 1155
Sau96I	GGNCC	1 cut(s)	6
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	2 cut(s)	439, 995
ScrFI	CCNGG	3 cut(s)	207, 970, 1023
SduI	GDGCHC	3 cut(s)	311, 1125, 1173
SfaNI	GCATC	3 cut(s)	354, 497, 766
SmiMI	CAYNNNNRTG	2 cut(s)	188, 301
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	9 cut(s)	79, 125, 132, 255, 586, 769, 783, 811, 1197
SsiI	CCGC	3 cut(s)	85, 88, 1187
SstI	GAGCTC	1 cut(s)	1125
StyD4I	CCNGG	3 cut(s)	205, 968, 1021
StyI	CCWWGG	2 cut(s)	97, 274
TaaI	ACNGT	2 cut(s)	905, 999
TaiI	ACGT	1 cut(s)	679
TasI	AATT	9 cut(s)	79, 125, 132, 255, 586, 769, 783, 811, 1197
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	1084
Tru1I	TTAA	3 cut(s)	348, 900, 1208
Tru9I	TTAA	3 cut(s)	348, 900, 1208
TscAI	CASTG	4 cut(s)	316, 374, 384, 985
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	299, 750, 975
TspGWI	ACGGA	3 cut(s)	376, 633, 879
TspRI	CASTG	4 cut(s)	316, 374, 384, 985
XapI	RAATTY	5 cut(s)	79, 125, 255, 811, 1197
XceI	RCATGY	2 cut(s)	187, 922
XmiI	GTMKAC	1 cut(s)	861
ZrmI	AGTACT	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.