Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

39682902 .. 39684298

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCGTGTTCGGCAGCAGTGCCGACCACTGCTTGAAAGCCAGTTTAAACCAATAATTGCTGATAACTACTTCAATCCACAGCATTTCATGTTTGAGCTTGATCATGTTCAAACAAGAAATCTGCTATCTCTGCTAGCACCATTGACGATTTCTCCAGGTAAACCAACACGACAGAATCCAATGCTGAGGAAAACTGATTTTCGAGCTCTTCCATCATCTAGTACAATACAGAAAGCTGAATCGTGTAAGCCGCCCACTTCAGAGGCTGAGAATCCTACTCCTGTACCCAACTGGGAAACTGATTTTCCAGCTCTTCCAACTCAGAATACAATACAGAAAACTGAATTGCTGAAACCACCCACTTCAGGGGCTGAGAATTTGACTTCTGTACCCACAGTGAACTGGGAAACTGAGTTTCCAGCTCTTCCATCACGTAATACATTACAAAAGAAAGCTGTATTGTGTAAACCAGCCACTTCTGCAACTTCTGTACCACAGAATAGAGTCGAGCTGGAAACTGATATTCCAACTCTTCCCTCAAGTAGCACAGTAGAGGAACCTGAATGGCCTTATCAACTTACTTCAGAGGCTGAGCATCTGAACAGTTCAGGTCTTAAAGGGAATACAGTGAAGTGGGAAGCTGATTTTCCAGATTTTCCCTCAATTAACATAATACATGAACCTGAATGGCTTGAAGCACTTATTTCAGAGGCTGAGCATTTGAATGGTTCAAATCTGAAATTGGATTCTGTACCTTTGGCTGGAGATGCTGTAGATAGTAAGGCGGAGAGTCCATACTCCCAGTTTGATCAGAAGAGTGGGAGAGAGTTCTTGCTACTTTTCTGCGCAGAGTCCTGGATCCATTTGCTTCAAGAGGTGCAAGAGCTGAAGGCGTCTAGTACTGCACAGACTGAGAAGATGAGCTATTTAGAGGATAAGCTGGTGCAGGCGTTGTTTGAAATCCAACAGTTAAAAAGACTTGTTAATAGATGGAGTCTGAGTCTACACCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

338

Amino Acids

38.03

Weight (kDa)

5.16

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	2 - 44	4.7e-10	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	847
AccI	GTMKAC	1 cut(s)	1003
AciI	CCGC	2 cut(s)	251, 785
AclWI	GGATC	2 cut(s)	853, 866
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	4 cut(s)	243, 348, 567, 908
AcyI	GRCGYC	1 cut(s)	893
AfaI	GTAC	6 cut(s)	223, 285, 390, 492, 753, 901
AfiI	CCNNNNNNNGG	3 cut(s)	365, 366, 761
AgsI	TTSAA	8 cut(s)	35, 73, 110, 695, 724, 732, 872, 959
AjnI	CCWGG	2 cut(s)	154, 854
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	853, 866
AlwNI	CAGNNNCTG	4 cut(s)	266, 371, 590, 713
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	848
AsuNHI	GCTAGC	1 cut(s)	133
BaeI	ACNNNNGTAYC	6 cut(s)	267, 300, 372, 405, 474, 507
BamHI	GGATCC	1 cut(s)	858
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	3 cut(s)	220, 436, 984
BciT130I	CCWGG	2 cut(s)	156, 856
BclI	TGATCA	2 cut(s)	100, 808
BfaI	CTAG	3 cut(s)	134, 219, 897
BfmI	CTRYAG	1 cut(s)	771
BisI	GCNGC	2 cut(s)	14, 251
BlpI	GCTNAGC	2 cut(s)	591, 714
BlsI	GCNGC	2 cut(s)	15, 252
BmcAI	AGTACT	1 cut(s)	901
Bme1390I	CCNGG	2 cut(s)	156, 856
BmiI	GGNNCC	2 cut(s)	558, 860
BmrFI	CCNGG	2 cut(s)	156, 856
BmrI	ACTGGG	3 cut(s)	301, 412, 796
BmsI	GCATC	2 cut(s)	604, 757
BmtI	GCTAGC	1 cut(s)	137
BmuI	ACTGGG	3 cut(s)	301, 412, 796
BpmI	CTGGAG	2 cut(s)	138, 783
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu1102I	GCTNAGC	2 cut(s)	591, 714
BpuEI	CTTGAG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	893
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 166, 756, 786, 985, 1015
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 366, 761
Bse1I	ACTGG	4 cut(s)	40, 296, 407, 802
BseBI	CCWGG	2 cut(s)	156, 856
BseLI	CCNNNNNNNGG	3 cut(s)	365, 366, 761
BseMII	CTCAG	9 cut(s)	176, 258, 335, 363, 402, 582, 705, 903, 989
BseNI	ACTGG	4 cut(s)	40, 296, 407, 802
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	2 cut(s)	888, 965
BshFI	GGCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	365, 366, 761
BsnI	GGCC	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	100, 808, 858
Bsp1720I	GCTNAGC	2 cut(s)	591, 714
BspACI	CCGC	2 cut(s)	251, 785
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	9 cut(s)	177, 259, 334, 364, 403, 583, 706, 904, 990
BspLI	GGNNCC	2 cut(s)	558, 860
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	853, 866
BspQI	GCTCTTC	3 cut(s)	213, 318, 429
BsrI	ACTGG	4 cut(s)	40, 296, 407, 802
BssMI	GATC	3 cut(s)	100, 808, 858
BssNI	GRCGYC	1 cut(s)	893
Bst2UI	CCWGG	2 cut(s)	156, 856
Bst4CI	ACNGT	5 cut(s)	397, 550, 605, 628, 969
Bst6I	CTCTTC	5 cut(s)	213, 318, 429, 537, 809
BstACI	GRCGYC	1 cut(s)	893
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	135, 948
BstDEI	CTNAG	9 cut(s)	185, 267, 321, 372, 411, 591, 714, 912, 998
BstHHI	GCGC	1 cut(s)	848
BstKTI	GATC	3 cut(s)	103, 811, 861
BstMBI	GATC	3 cut(s)	100, 808, 858
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 130, 479, 767
BstNI	CCWGG	2 cut(s)	156, 856
BstSCI	CCNGG	2 cut(s)	154, 854
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	858
BstYI	RGATCY	1 cut(s)	858
BsuRI	GGCC	1 cut(s)	568
BtsI	GCAGTG	2 cut(s)	23, 26
BtsIMutI	CAGTG	4 cut(s)	23, 26, 402, 633
Cac8I	GCNNGC	2 cut(s)	135, 948
CaiI	CAGNNNCTG	4 cut(s)	266, 371, 590, 713
CfoI	GCGC	1 cut(s)	848
CseI	GACGC	1 cut(s)	882
Csp6I	GTAC	6 cut(s)	222, 284, 389, 491, 752, 900
CviAII	CATG	3 cut(s)	88, 104, 677
CviQI	GTAC	6 cut(s)	222, 284, 389, 491, 752, 900
DdeI	CTNAG	9 cut(s)	185, 267, 321, 372, 411, 591, 714, 912, 998
DpnI	GATC	3 cut(s)	102, 810, 860
DpnII	GATC	3 cut(s)	100, 808, 858
DraI	TTTAAA	1 cut(s)	46
Eam1104I	CTCTTC	5 cut(s)	213, 318, 429, 537, 809
EarI	CTCTTC	5 cut(s)	213, 318, 429, 537, 809
EciI	GGCGGA	1 cut(s)	800
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	4 cut(s)	243, 348, 567, 908
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	154, 854
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	3 cut(s)	91, 107, 680
FaiI	YATR	6 cut(s)	89, 105, 671, 678, 796, 1015
FatI	CATG	3 cut(s)	87, 103, 676
FbaI	TGATCA	2 cut(s)	100, 808
FblI	GTMKAC	1 cut(s)	1003
Fnu4HI	GCNGC	2 cut(s)	14, 251
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	14, 251
FspBI	CTAG	3 cut(s)	134, 219, 897
FspI	TGCGCA	1 cut(s)	847
GlaI	GCGC	1 cut(s)	847
GluI	GCNGC	2 cut(s)	14, 251
GsuI	CTGGAG	2 cut(s)	138, 783
HaeIII	GGCC	1 cut(s)	568
HgaI	GACGC	1 cut(s)	882
HhaI	GCGC	1 cut(s)	848
Hin1I	GRCGYC	1 cut(s)	893
Hin1II	CATG	3 cut(s)	91, 107, 680
Hin6I	GCGC	1 cut(s)	846
HinP1I	GCGC	1 cut(s)	846
HinfI	GANTC	9 cut(s)	175, 239, 271, 504, 746, 790, 851, 994, 1000
Hpy166II	GTNNAC	4 cut(s)	161, 400, 467, 1004
Hpy188I	TCNGA	8 cut(s)	262, 324, 586, 600, 709, 738, 813, 999
Hpy188III	TCNNGA	2 cut(s)	650, 872
Hpy8I	GTNNAC	4 cut(s)	161, 400, 467, 1004
HpyAV	CCTTC	1 cut(s)	883
HpyCH4III	ACNGT	5 cut(s)	397, 550, 605, 628, 969
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	482, 880, 905, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 130, 479, 767
HpyF3I	CTNAG	9 cut(s)	185, 267, 321, 372, 411, 591, 714, 912, 998
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	893
Hsp92II	CATG	3 cut(s)	91, 107, 680
HspAI	GCGC	1 cut(s)	846
Ksp22I	TGATCA	2 cut(s)	100, 808
Kzo9I	GATC	3 cut(s)	100, 808, 858
LguI	GCTCTTC	3 cut(s)	213, 318, 429
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	2 cut(s)	604, 757
MaeI	CTAG	3 cut(s)	134, 219, 897
MaeII	ACGT	1 cut(s)	433
MalI	GATC	3 cut(s)	102, 810, 860
MboI	GATC	3 cut(s)	100, 808, 858
MboII	GAAGA	6 cut(s)	200, 305, 416, 524, 826, 928
MflI	RGATCY	1 cut(s)	858
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	5 cut(s)	54, 344, 376, 663, 740
MlyI	GAGTC	5 cut(s)	513, 799, 860, 1003, 1009
MmeI	TCCRAC	3 cut(s)	341, 551, 988
MnlI	CCTC	9 cut(s)	180, 256, 547, 547, 580, 670, 703, 868, 925
MseI	TTAA	5 cut(s)	45, 615, 666, 971, 984
MslI	CAYNNNNRTG	1 cut(s)	723
MspR9I	CCNGG	2 cut(s)	156, 856
MssI	GTTTAAAC	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	156, 856
MwoI	GCNNNNNNNGC	4 cut(s)	10, 130, 479, 767
NdeII	GATC	3 cut(s)	100, 808, 858
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	91, 107, 680
NlaIV	GGNNCC	2 cut(s)	558, 860
NsbI	TGCGCA	1 cut(s)	847
PciSI	GCTCTTC	3 cut(s)	213, 318, 429
PfeI	GAWTC	4 cut(s)	175, 239, 271, 746
PfoI	TCCNGGA	1 cut(s)	854
PkrI	GCNGC	2 cut(s)	15, 252
PleI	GAGTC	5 cut(s)	512, 798, 859, 1002, 1008
PmeI	GTTTAAAC	1 cut(s)	46
PpsI	GAGTC	5 cut(s)	512, 798, 859, 1002, 1008
Ppu21I	YACGTR	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	154, 854
PspGI	CCWGG	2 cut(s)	154, 854
PspN4I	GGNNCC	2 cut(s)	558, 860
PstNI	CAGNNNCTG	4 cut(s)	266, 371, 590, 713
PsuI	RGATCY	1 cut(s)	858
RsaI	GTAC	6 cut(s)	223, 285, 390, 492, 753, 901
RsaNI	GTAC	6 cut(s)	222, 284, 389, 491, 752, 900
RseI	CAYNNNNRTG	1 cut(s)	723
SacI	GAGCTC	1 cut(s)	208
SapI	GCTCTTC	3 cut(s)	213, 318, 429
SaqAI	TTAA	5 cut(s)	45, 615, 666, 971, 984
SatI	GCNGC	2 cut(s)	14, 251
Sau3AI	GATC	3 cut(s)	100, 808, 858
ScaI	AGTACT	1 cut(s)	901
SchI	GAGTC	5 cut(s)	513, 799, 860, 1003, 1009
ScrFI	CCNGG	2 cut(s)	156, 856
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	604, 757
SfcI	CTRYAG	1 cut(s)	771
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
Sse9I	AATT	5 cut(s)	54, 344, 376, 663, 740
SsiI	CCGC	2 cut(s)	251, 785
SspMI	CTAG	3 cut(s)	134, 219, 897
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	154, 854
TaaI	ACNGT	5 cut(s)	397, 550, 605, 628, 969
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	202, 507
TasI	AATT	5 cut(s)	54, 344, 376, 663, 740
TatI	WGTACW	2 cut(s)	221, 899
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	4 cut(s)	175, 239, 271, 746
Tru1I	TTAA	5 cut(s)	45, 615, 666, 971, 984
Tru9I	TTAA	5 cut(s)	45, 615, 666, 971, 984
TscAI	CASTG	4 cut(s)	23, 33, 402, 633
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	76, 693
TspRI	CASTG	4 cut(s)	23, 33, 402, 633
XapI	RAATTY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	1003
XspI	CTAG	3 cut(s)	134, 219, 897
ZrmI	AGTACT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.