Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

20796383 .. 20798529

Gene Structure 2147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG136600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCAATTAACAATCCCCCATCCCTCCTCCCAATTTTCTGTTCATCAGTGTTAGCCTGCATTCCATCACATATAATACTGTTTAAGGTACATGACCTTTGTTTCTTATTCAGGTATTCGGATGTGAAAATGGGAGCTGGAAGGAAGACTCAAACCTTTATTTTGCCTCCTAATGCAGACCTGGCACCCTACCCTGTACAAGCAAGACAATTGAGAAGTAATCACCTTGGTGGAGTTATATTTTGGTGCAAGAGCAGCACAATGATGGAGTGTTTATCTAAACAACTCTTTGGTTTACCGGTGAGAACACAATTTCCTGCACAGGTTCAAATTCGCATCCGACTGCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCAATTATTGCAGACAACTACTACAGTGCAAATAAATTCTGGTTTGAGATTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGCGCGGTTGTGCAATCTCTCCAGTTGGTTCAAGAGGTAGAAGAGCTAAAGGCTTTCAAGAATGAACAAACTAAGAAGATAGGCTATTTGGAGTATAAGCCGGCTCTAACCTATGCTTTGAAGGCCATAGAAACTCGAAAAGAATTATACGATAAGTATGAATTAATCGTTTATAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

217

Amino Acids

24.89

Weight (kDa)

8.89

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	102 - 154	4e-17	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	1 cut(s)	476
AciI	CCGC	1 cut(s)	476
AcsI	RAATTY	2 cut(s)	330, 413
AfaI	GTAC	2 cut(s)	90, 198
AgeI	ACCGGT	1 cut(s)	298
AgsI	TTSAA	5 cut(s)	329, 365, 503, 529, 592
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	228
AloI	GAACNNNNNNTCC	2 cut(s)	298, 330
AluBI	AGCT	3 cut(s)	137, 451, 517
AluI	AGCT	3 cut(s)	137, 451, 517
Alw26I	GTCTC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	594
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	2 cut(s)	330, 413
AseI	ATTAAT	1 cut(s)	635
AsiGI	ACCGGT	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	215, 313
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	3 cut(s)	28, 73, 259
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	344, 400
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	345, 476
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	298
Bse118I	RCCGGY	2 cut(s)	298, 571
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	3 cut(s)	20, 127, 336
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	1 cut(s)	596
BshNI	GGYRCC	1 cut(s)	184
BshTI	ACCGGT	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	299, 572
BsmAI	GTCTC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	1 cut(s)	596
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	298, 571
BsrGI	TGTACA	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	2 cut(s)	298, 571
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	81, 404
Bst6I	CTCTTC	1 cut(s)	507
BstAUI	TGTACA	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	58, 573
BstDEI	CTNAG	2 cut(s)	438, 543
BstF5I	GGATG	3 cut(s)	20, 127, 336
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 255, 473, 593
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	2 cut(s)	344, 400
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	20, 127, 336
BtsI	GCAGTG	2 cut(s)	353, 356
BtsIMutI	CAGTG	4 cut(s)	54, 353, 356, 409
Cac8I	GCNNGC	2 cut(s)	58, 573
CfoI	GCGC	1 cut(s)	476
Cfr10I	RCCGGY	2 cut(s)	298, 571
Csp6I	GTAC	2 cut(s)	89, 197
CspAI	ACCGGT	1 cut(s)	298
CviAII	CATG	2 cut(s)	92, 434
CviJI	RGCY	9 cut(s)	56, 137, 451, 517, 524, 555, 571, 575, 596
CviKI_1	RGCY	9 cut(s)	56, 137, 451, 517, 524, 555, 571, 575, 596
CviQI	GTAC	2 cut(s)	89, 197
DdeI	CTNAG	2 cut(s)	438, 543
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraI	TTTAAA	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	95, 437
FatI	CATG	2 cut(s)	91, 433
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	3 cut(s)	7, 134, 323
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	596
HapII	CCGG	2 cut(s)	299, 572
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	95, 437
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	299, 572
HphI	GGTGA	2 cut(s)	215, 313
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	121, 341
Hpy188III	TCNNGA	2 cut(s)	503, 529
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	135, 586
HpyCH4III	ACNGT	2 cut(s)	81, 404
HpyCH4V	TGCA	9 cut(s)	60, 176, 249, 320, 346, 351, 389, 407, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 255, 473, 593
HpyF3I	CTNAG	2 cut(s)	438, 543
Hsp92II	CATG	2 cut(s)	95, 437
HspAI	GCGC	1 cut(s)	474
KroI	GCCGGC	1 cut(s)	571
KroNI	GCCGGC	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	2 cut(s)	345, 476
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	3 cut(s)	157, 524, 559
MfeI	CAATTG	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	4 cut(s)	35, 38, 177, 499
MroNI	GCCGGC	1 cut(s)	571
MseI	TTAA	4 cut(s)	9, 84, 375, 635
MslI	CAYNNNNRTG	2 cut(s)	228, 263
MspI	CCGG	2 cut(s)	299, 572
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	182, 255, 473, 593
NaeI	GCCGGC	1 cut(s)	573
NdeII	GATC	1 cut(s)	430
NgoMIV	GCCGGC	1 cut(s)	571
NlaIII	CATG	2 cut(s)	95, 437
NlaIV	GGNNCC	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	573
PinAI	ACCGGT	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	348
RsaI	GTAC	2 cut(s)	90, 198
RsaNI	GTAC	2 cut(s)	89, 197
RseI	CAYNNNNRTG	2 cut(s)	228, 263
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	4 cut(s)	9, 84, 375, 635
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	182
SfaNI	GCATC	2 cut(s)	345, 476
SfcI	CTRYAG	2 cut(s)	344, 400
SmiMI	CAYNNNNRTG	2 cut(s)	228, 263
SsiI	CCGC	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	81, 404
TaqI	TCGA	1 cut(s)	607
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	4 cut(s)	9, 84, 375, 635
Tru9I	TTAA	4 cut(s)	9, 84, 375, 635
TscAI	CASTG	4 cut(s)	54, 353, 363, 409
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	3 cut(s)	33, 549, 645
TspRI	CASTG	4 cut(s)	54, 353, 363, 409
VspI	ATTAAT	1 cut(s)	635
XapI	RAATTY	2 cut(s)	330, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.