Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000790.1

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Forward (+)

30 .. 2345

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000790.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgggagctggaaggaagacgcaaacctttattttgcctcctaatgcagacctggcaccctaccctgtacaagcaagacagttgagaagtaatcaccttggggcgaaaacactagttggaaactacaatccatttgaagctgtattagatgtgaaagatgctgaacaagatgaacagcacctcatttgcacgaaactgaaagagttgtctcttcaacatgatctcaacagtgaataccaaaaggtgcctttgtcaatagatgttaaagatagtgctattgttaatgcaacgcctgtagcagtcaattggaatccacccgaaccatggggtttagtggagatgagggtagagaggtctcattcctggtctgagaagaagagtggagggagtccttgctcattgtctgagctgagtcctcgatcctcgtctgatcagtcacaaatcgataaggagcaggcacagtctgagattaaactgtcaaaagatgatatgaagtttgaatctgagtctacagcatcccttgcacatattgatgaaaagcaggcagagtctgaaactaagttaaaagacggtatgaagttggaatccgagtctgtaccctccacacaagggaaggattatgcattgtgtgatatgctggatgtggatcctcatgagtcaatatatctagtcggaatgatggtgaattatcatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

232

Amino Acids

25.83

Weight (kDa)

4.93

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	55, 244
AccI	GTMKAC	1 cut(s)	509
AclWI	GGATC	3 cut(s)	414, 641, 654
AfaI	GTAC	2 cut(s)	69, 597
AfiI	CCNNNNNNNGG	2 cut(s)	324, 609
AgsI	TTSAA	3 cut(s)	137, 215, 500
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	51, 362
AluBI	AGCT	3 cut(s)	8, 140, 409
AluI	AGCT	3 cut(s)	8, 140, 409
Alw26I	GTCTC	2 cut(s)	213, 360
AlwI	GGATC	3 cut(s)	414, 641, 654
AlwNI	CAGNNNCTG	1 cut(s)	551
AsuHPI	GGTGA	2 cut(s)	86, 694
BamHI	GGATCC	1 cut(s)	646
BanI	GGYRCC	2 cut(s)	55, 244
BbsI	GAAGAC	1 cut(s)	23
BccI	CCATC	1 cut(s)	673
BciT130I	CCWGG	2 cut(s)	53, 364
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	213, 360
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	2 cut(s)	113, 668
BfmI	CTRYAG	2 cut(s)	294, 510
Bme1390I	CCNGG	2 cut(s)	53, 364
BmiI	GGNNCC	3 cut(s)	57, 246, 648
BmrFI	CCNGG	2 cut(s)	53, 364
BmsI	GCATC	2 cut(s)	148, 524
BpiI	GAAGAC	1 cut(s)	23
Bsa29I	ATCGAT	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	97, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 609
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	53, 364
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	97, 323
BseGI	GGATG	2 cut(s)	515, 646
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	324, 609
BseMII	CTCAG	5 cut(s)	360, 396, 401, 456, 495
BshNI	GGYRCC	2 cut(s)	55, 244
BshVI	ATCGAT	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	324, 609
BsmAI	GTCTC	2 cut(s)	213, 360
Bso31I	GGTCTC	1 cut(s)	360
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	220, 419, 430, 646
Bsp19I	CCATGG	1 cut(s)	323
BspCNI	CTCAG	5 cut(s)	361, 397, 402, 457, 496
BspDI	ATCGAT	1 cut(s)	444
BspHI	TCATGA	2 cut(s)	652, 691
BspLI	GGNNCC	3 cut(s)	57, 246, 648
BspPI	GGATC	3 cut(s)	414, 641, 654
BspT107I	GGYRCC	2 cut(s)	55, 244
BspTNI	GGTCTC	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	97, 323
BssMI	GATC	4 cut(s)	220, 419, 430, 646
BssT1I	CCWWGG	2 cut(s)	97, 323
Bst2UI	CCWGG	2 cut(s)	53, 364
Bst4CI	ACNGT	5 cut(s)	81, 230, 462, 477, 572
Bst6I	CTCTTC	2 cut(s)	216, 371
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstAUI	TGTACA	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	456, 543
BstDEI	CTNAG	6 cut(s)	369, 405, 410, 465, 504, 558
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	515, 646
BstKTI	GATC	4 cut(s)	223, 422, 433, 649
BstMAI	GTCTC	2 cut(s)	213, 360
BstMBI	GATC	4 cut(s)	220, 419, 430, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 521
BstNI	CCWGG	2 cut(s)	53, 364
BstSCI	CCNGG	2 cut(s)	51, 362
BstSFI	CTRYAG	2 cut(s)	294, 510
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
Bsu15I	ATCGAT	1 cut(s)	444
BsuTUI	ATCGAT	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	515, 646
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	456, 543
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	2 cut(s)	652, 691
ClaI	ATCGAT	1 cut(s)	444
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	68, 596
CviAII	CATG	4 cut(s)	218, 324, 653, 692
CviJI	RGCY	3 cut(s)	8, 140, 409
CviKI_1	RGCY	3 cut(s)	8, 140, 409
CviQI	GTAC	2 cut(s)	68, 596
DdeI	CTNAG	6 cut(s)	369, 405, 410, 465, 504, 558
DpnI	GATC	4 cut(s)	222, 421, 432, 648
DpnII	GATC	4 cut(s)	220, 419, 430, 646
Eam1104I	CTCTTC	2 cut(s)	216, 371
EarI	CTCTTC	2 cut(s)	216, 371
Eco130I	CCWWGG	2 cut(s)	97, 323
Eco31I	GGTCTC	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	51, 362
EcoT14I	CCWWGG	2 cut(s)	97, 323
EcoT22I	ATGCAT	1 cut(s)	625
ErhI	CCWWGG	2 cut(s)	97, 323
FaeI	CATG	4 cut(s)	221, 327, 656, 695
FatI	CATG	4 cut(s)	217, 323, 652, 691
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	509
FokI	GGATG	2 cut(s)	502, 653
FspBI	CTAG	2 cut(s)	113, 668
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	221, 327, 656, 695
HinfI	GANTC	9 cut(s)	310, 388, 412, 500, 506, 548, 584, 590, 656
HphI	GGTGA	2 cut(s)	86, 694
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	8 cut(s)	370, 406, 430, 466, 505, 553, 589, 674
Hpy188III	TCNNGA	2 cut(s)	653, 692
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	6, 607
HpyCH4III	ACNGT	5 cut(s)	81, 230, 462, 477, 572
HpyCH4V	TGCA	5 cut(s)	47, 189, 287, 524, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 521
HpyF3I	CTNAG	6 cut(s)	369, 405, 410, 465, 504, 558
Hsp92II	CATG	4 cut(s)	221, 327, 656, 695
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	220, 419, 430, 646
LmnI	GCTCC	2 cut(s)	5, 451
LpnPI	CCDG	9 cut(s)	38, 65, 78, 306, 349, 376, 440, 527, 623
LweI	GCATC	2 cut(s)	148, 524
MaeI	CTAG	2 cut(s)	113, 668
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	4 cut(s)	222, 421, 432, 648
MboI	GATC	4 cut(s)	220, 419, 430, 646
MboII	GAAGA	4 cut(s)	28, 203, 385, 388
MfeI	CAATTG	1 cut(s)	304
MflI	RGATCY	1 cut(s)	646
MluCI	AATT	2 cut(s)	304, 685
MlyI	GAGTC	6 cut(s)	397, 421, 515, 557, 599, 665
MmeI	TCCRAC	3 cut(s)	97, 561, 652
MnlI	CCTC	9 cut(s)	48, 191, 336, 345, 377, 426, 433, 610, 660
Mph1103I	ATGCAT	1 cut(s)	625
MseI	TTAA	4 cut(s)	264, 282, 471, 563
MslI	CAYNNNNRTG	1 cut(s)	531
MspR9I	CCNGG	2 cut(s)	53, 364
MunI	CAATTG	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	53, 364
MwoI	GCNNNNNNNGC	2 cut(s)	53, 521
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	4 cut(s)	220, 419, 430, 646
NlaIII	CATG	4 cut(s)	221, 327, 656, 695
NlaIV	GGNNCC	3 cut(s)	57, 246, 648
NmuCI	GTSAC	1 cut(s)	435
NsiI	ATGCAT	1 cut(s)	625
PagI	TCATGA	2 cut(s)	652, 691
PfeI	GAWTC	3 cut(s)	310, 500, 584
PleI	GAGTC	6 cut(s)	396, 420, 514, 556, 598, 664
PpsI	GAGTC	6 cut(s)	396, 420, 514, 556, 598, 664
Psp6I	CCWGG	2 cut(s)	51, 362
PspGI	CCWGG	2 cut(s)	51, 362
PspN4I	GGNNCC	3 cut(s)	57, 246, 648
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	2 cut(s)	69, 597
RsaNI	GTAC	2 cut(s)	68, 596
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	264, 282, 471, 563
Sau3AI	GATC	4 cut(s)	220, 419, 430, 646
SchI	GAGTC	6 cut(s)	397, 421, 515, 557, 599, 665
ScrFI	CCNGG	2 cut(s)	53, 364
SetI	ASST	9 cut(s)	10, 29, 54, 99, 142, 183, 246, 356, 411
SfaNI	GCATC	2 cut(s)	148, 524
SfcI	CTRYAG	2 cut(s)	294, 510
SmiMI	CAYNNNNRTG	1 cut(s)	531
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	2 cut(s)	304, 685
SspMI	CTAG	2 cut(s)	113, 668
StyD4I	CCNGG	2 cut(s)	51, 362
StyI	CCWWGG	2 cut(s)	97, 323
TaaI	ACNGT	5 cut(s)	81, 230, 462, 477, 572
TaqI	TCGA	2 cut(s)	418, 444
TasI	AATT	2 cut(s)	304, 685
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	310, 500, 584
Tru1I	TTAA	4 cut(s)	264, 282, 471, 563
Tru9I	TTAA	4 cut(s)	264, 282, 471, 563
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	4 cut(s)	186, 506, 549, 590
TspRI	CASTG	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	509
XspI	CTAG	2 cut(s)	113, 668
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.