Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

62961949 .. 62963228

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCAATTAACAATCCCCCATCCCTCCTCCCAATTTTCTGTTCATCAGTGTTAGCCTGCATTCCATCACATATAATACTGTTTAAGGTACATGACCTTTGTTTCTTATTCAGGTATTCGGATGTGAAAATGGGAGCTGGAAGGAAGACTCAAACCTTTATTTTGCCTCCTAATGCAGACCTGGCACCCTACCCTGTACAAGCAAGACAATTGAGAAGTAATCACCTTGGTGGAGTTATATTTTGGTGCAAGAGCAGCACAATGATGGAAATATTAGTCCTGGCTGCTGGGCATGGCCAAATGAATATTGATCCATATGGTTGGACAACTGATGGATCAGTGAGAACACAATTTCCTGCACAGGTTCAAATTCGCATCCGGCTCCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCAATTATTGCAGACAACTACTACAGTGCAAATAAATTCTGGTTTGAGATTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGCGCGGTTGTGCAATCTCTCCAGTTGGTTCAAGAGGTAGAAGAGCTAAAGGCTTTCAAGAATGAACAAACTAAGAAGATAGGCTATTTGGAGTATAAGCCGGTACTGGATACAGTATTTCTGTTAAATTTTCTATGTATTCGTCTCATTATGTTATTTCCTCTGTTTATTCATGTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

230

Amino Acids

26.21

Weight (kDa)

8.81

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	95 - 167	1.4e-22	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	1 cut(s)	515
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	2 cut(s)	305, 343
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	3 cut(s)	369, 452, 637
AfaI	GTAC	3 cut(s)	90, 198, 615
AgsI	TTSAA	4 cut(s)	368, 404, 542, 568
AjnI	CCWGG	2 cut(s)	180, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	228
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	3 cut(s)	137, 490, 556
AluI	AGCT	3 cut(s)	137, 490, 556
Alw26I	GTCTC	2 cut(s)	473, 659
AlwI	GGATC	2 cut(s)	305, 343
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	255, 284
ApoI	RAATTY	3 cut(s)	369, 452, 637
AspLEI	GCGC	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	267, 271
BccI	CCATC	4 cut(s)	28, 73, 259, 326
BciT130I	CCWGG	2 cut(s)	182, 281
BciVI	GTATCC	1 cut(s)	613
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	473, 659
BfmI	CTRYAG	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	2 cut(s)	256, 285
BlsI	GCNGC	2 cut(s)	257, 286
Bme1390I	CCNGG	2 cut(s)	182, 281
BmiI	GGNNCC	2 cut(s)	186, 383
BmrFI	CCNGG	2 cut(s)	182, 281
BmsI	GCATC	2 cut(s)	384, 515
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	2 cut(s)	368, 515
BsaJI	CCNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	3 cut(s)	385, 532, 621
BseBI	CCWGG	2 cut(s)	182, 281
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	3 cut(s)	20, 127, 375
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	3 cut(s)	385, 532, 621
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	267, 271
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	379, 611
BsmAI	GTCTC	2 cut(s)	473, 659
BsmBI	CGTCTC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	297
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	310, 335, 469
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	186, 383
BspPI	GGATC	2 cut(s)	305, 343
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	610
BsrGI	TGTACA	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	385, 532, 621
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	3 cut(s)	310, 335, 469
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	182, 281
Bst4CI	ACNGT	3 cut(s)	81, 443, 625
Bst6I	CTCTTC	1 cut(s)	546
BstAUI	TGTACA	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	477, 582
BstF5I	GGATG	3 cut(s)	20, 127, 375
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	3 cut(s)	313, 338, 472
BstMAI	GTCTC	2 cut(s)	473, 659
BstMBI	GATC	3 cut(s)	310, 335, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 255, 512
BstNI	CCWGG	2 cut(s)	182, 281
BstSCI	CCNGG	2 cut(s)	180, 279
BstSFI	CTRYAG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	2 cut(s)	267, 271
BstV2I	GAAGAC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	20, 127, 375
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	5 cut(s)	54, 345, 392, 395, 448
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	610
Csp6I	GTAC	3 cut(s)	89, 197, 614
CviAII	CATG	4 cut(s)	92, 293, 473, 683
CviQI	GTAC	3 cut(s)	89, 197, 614
DdeI	CTNAG	2 cut(s)	477, 582
DpnI	GATC	3 cut(s)	312, 337, 471
DpnII	GATC	3 cut(s)	310, 335, 469
DraI	TTTAAA	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	180, 279
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	4 cut(s)	95, 296, 476, 686
FatI	CATG	4 cut(s)	91, 292, 472, 682
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	256, 285
FokI	GGATG	3 cut(s)	7, 134, 362
Fsp4HI	GCNGC	2 cut(s)	256, 285
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	2 cut(s)	256, 285
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	2 cut(s)	368, 515
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	2 cut(s)	379, 611
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	4 cut(s)	95, 296, 476, 686
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	379, 611
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	542, 568
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	3 cut(s)	81, 443, 625
HpyCH4V	TGCA	8 cut(s)	60, 176, 249, 359, 390, 428, 446, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 255, 512
HpyF3I	CTNAG	2 cut(s)	477, 582
Hsp92II	CATG	4 cut(s)	95, 296, 476, 686
HspAI	GCGC	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	310, 335, 469
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	2 cut(s)	134, 387
Lsp1109I	GCAGC	2 cut(s)	267, 271
LweI	GCATC	2 cut(s)	384, 515
MalI	GATC	3 cut(s)	312, 337, 471
MboI	GATC	3 cut(s)	310, 335, 469
MboII	GAAGA	3 cut(s)	157, 563, 598
MfeI	CAATTG	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	9 cut(s)	6, 33, 209, 350, 369, 410, 420, 452, 637
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	35, 38, 177, 538, 681
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	5 cut(s)	9, 84, 414, 635, 687
MslI	CAYNNNNRTG	2 cut(s)	228, 263
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	2 cut(s)	379, 611
MspR9I	CCNGG	2 cut(s)	182, 281
MunI	CAATTG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	2 cut(s)	182, 281
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	182, 255, 512
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	310, 335, 469
NlaIII	CATG	4 cut(s)	95, 296, 476, 686
NlaIV	GGNNCC	2 cut(s)	186, 383
OliI	CACNNNNGTG	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	546
PctI	GAATGC	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	257, 286
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	180, 279
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	180, 279
PspN4I	GGNNCC	2 cut(s)	186, 383
RsaI	GTAC	3 cut(s)	90, 198, 615
RsaNI	GTAC	3 cut(s)	89, 197, 614
RseI	CAYNNNNRTG	2 cut(s)	228, 263
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	5 cut(s)	9, 84, 414, 635, 687
SatI	GCNGC	2 cut(s)	256, 285
Sau3AI	GATC	3 cut(s)	310, 335, 469
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	182, 281
SfaNI	GCATC	2 cut(s)	384, 515
SfcI	CTRYAG	1 cut(s)	439
SmiMI	CAYNNNNRTG	2 cut(s)	228, 263
Sse9I	AATT	9 cut(s)	6, 33, 209, 350, 369, 410, 420, 452, 637
SsiI	CCGC	1 cut(s)	515
SspI	AATATT	2 cut(s)	273, 307
StyD4I	CCNGG	2 cut(s)	180, 279
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	81, 443, 625
TasI	AATT	9 cut(s)	6, 33, 209, 350, 369, 410, 420, 452, 637
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	5 cut(s)	9, 84, 414, 635, 687
Tru9I	TTAA	5 cut(s)	9, 84, 414, 635, 687
TscAI	CASTG	5 cut(s)	54, 345, 392, 402, 448
TseI	GCWGC	2 cut(s)	255, 284
TspDTI	ATGAA	4 cut(s)	33, 317, 588, 671
TspRI	CASTG	5 cut(s)	54, 345, 392, 402, 448
XapI	RAATTY	3 cut(s)	369, 452, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.