Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

39670400 .. 39676317

Gene Structure 5918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTGGATCTGGATTCTAATGAGTCAATATATCTAGTTGGAGGATCTGATGGTGAATCATGGTTGTCATTGGATTCTTATTATCCTTCTCGAAATGTGATAAAATCTCTTGGACCAATGAGCTCAGTTCGTGCATATGCTTCTGTTGCAAAATTAAATGGTGATCTCTATGTGATTGGAGGTGGTGCTAGTGCTGTAGGTGGTGACGGTGCTGTGTGGTATGATACAGTTGAATCATACTGCCCTGCTGACGAGCAGTGGAAGGTCTGCCCTTCTTTGAGAGAGAAAAAGGGGAGCTTAGCTGCAGCTACCACAAACAACAAAATTTTTGCAATGGGTGGCGGCAATGGAATTGAGTGTTTTTCTGATGTTGAAATGCTTGATTTAGATGTTGGTCGATGGATCCGTACACAGTCAATGCTACAAAAGAGATTTGCGCTCGCTGCGGCAGAACTAAATGGAGTGATATACGCTACTGGAGGGTATGATGGGAATGGTTATTTGAAGTCCGTTGATAGATTTGATCCAAGGGAGCATAGTTGGAAGAAAGTCCCTTGTATGAAATCGGAAAGGGGTTGCCATTCATTGGTTACATTAAATGGAAAATTGTATGCTCTGGGTGGTTATGATGGAGATTCTATGGTGTCAAGTGTAGAAATTTTTGACCCACGCCTTGAGTCATGGATGCCTGGGGAACCAATGAACTACTCTAGGGGATATTCGGCTGCGGCTGTTGTTAATGATACCATCTATGTAATTGGAGGGGTGAAAGGGGATGCCAGCATTGCAGAGGCTGTTGAATGCTACAAGGAGGGCCAAGGTTGGCAAGAAATGGCGGGGGTGATTAGCAAAAGGTGCTTCCTGTCGGCCACTGCTTACTCGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008582 GO:0040008 GO:0044087 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

295

Amino Acids

31.82

Weight (kDa)

4.88

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_FBX42	PF13415	5 - 179	5.1e-09	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	6 - 139	6.5e-08	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
NANM	PF24996	7 - 117	2.8e-06	N-acetylneuraminate epimerase
Kelch_1	PF01344	44 - 93	4.6e-07	Kelch motif
Kelch_KLHDC2_KLHL20_DRC7	PF24681	50 - 255	7e-21	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin	PF13964	75 - 177	6.2e-06	Calicin, beta-propeller domain
Kelch_FKB95	PF25210	93 - 204	9.4e-12	FKB95, Kelch-repeats domain
Kelch_1	PF01344	101 - 140	1e-07	Kelch motif
Beta-prop_Calicin	PF13964	131 - 269	1.1e-16	Calicin, beta-propeller domain
Kelch_2	PF07646	144 - 187	5.5e-06	Kelch motif
Kelch_1	PF01344	146 - 188	2.2e-13	Kelch motif
Beta-prop_FBX42	PF13415	151 - 270	8.5e-09	FBX42, beta-propeller domain
Kelch_FKB95	PF25210	185 - 269	1.5e-11	FKB95, Kelch-repeats domain
Kelch_1	PF01344	191 - 235	5.1e-12	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	586
AciI	CCGC	4 cut(s)	342, 446, 728, 836
AclWI	GGATC	5 cut(s)	15, 52, 397, 410, 518
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	2 cut(s)	324, 657
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	233, 374, 505, 800
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	4 cut(s)	123, 297, 302, 308
AluI	AGCT	4 cut(s)	123, 297, 302, 308
Alw21I	GWGCWC	1 cut(s)	125
AlwI	GGATC	5 cut(s)	15, 52, 397, 410, 518
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	2 cut(s)	814, 867
ApeKI	GCWGC	4 cut(s)	302, 305, 443, 725
ApoI	RAATTY	2 cut(s)	324, 657
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	113, 814
AsuHPI	GGTGA	5 cut(s)	65, 173, 215, 778, 853
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	4 cut(s)	289, 317, 430, 712
BccI	CCATC	5 cut(s)	44, 393, 482, 623, 755
BciT130I	CCWGG	1 cut(s)	690
BfaI	CTAG	3 cut(s)	35, 189, 711
BfmI	CTRYAG	2 cut(s)	195, 303
BisI	GCNGC	7 cut(s)	303, 306, 343, 444, 447, 726, 729
BlpI	GCTNAGC	1 cut(s)	298
BlsI	GCNGC	7 cut(s)	304, 307, 344, 445, 448, 727, 730
Bme1390I	CCNGG	1 cut(s)	690
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 814
BmiI	GGNNCC	2 cut(s)	404, 696
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	2 cut(s)	675, 766
BpmI	CTGGAG	1 cut(s)	498
Bpu1102I	GCTNAGC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	527, 689, 817
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	3 cut(s)	339, 352, 783
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	3 cut(s)	527, 689, 817
BseGI	GGATG	2 cut(s)	690, 781
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	3 cut(s)	339, 352, 783
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	4 cut(s)	289, 317, 430, 712
BshFI	GGCC	2 cut(s)	816, 869
BsiHKAI	GWGCWC	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	2 cut(s)	816, 869
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	7, 44, 163, 402, 523
Bsp1720I	GCTNAGC	1 cut(s)	298
BspACI	CCGC	4 cut(s)	342, 446, 728, 836
BspANI	GGCC	2 cut(s)	816, 869
BspCNI	CTCAG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	404, 696
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	5 cut(s)	15, 52, 397, 410, 518
BsrDI	GCAATG	3 cut(s)	339, 352, 783
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	527, 689, 817
BssMI	GATC	5 cut(s)	7, 44, 163, 402, 523
BssT1I	CCWWGG	2 cut(s)	527, 817
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	3 cut(s)	209, 229, 414
BstAPI	GCANNNNNTGC	1 cut(s)	855
BstC8I	GCNNGC	2 cut(s)	441, 781
BstDEI	CTNAG	2 cut(s)	124, 298
BstF5I	GGATG	2 cut(s)	690, 781
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	5 cut(s)	10, 47, 166, 405, 526
BstMBI	GATC	5 cut(s)	7, 44, 163, 402, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 443, 785, 855
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	1 cut(s)	688
BstSFI	CTRYAG	2 cut(s)	195, 303
BstV1I	GCAGC	4 cut(s)	289, 317, 430, 712
BstX2I	RGATCY	3 cut(s)	7, 44, 402
BstYI	RGATCY	3 cut(s)	7, 44, 402
BsuRI	GGCC	2 cut(s)	816, 869
BtsCI	GGATG	2 cut(s)	690, 781
BtsI	GCAGTG	2 cut(s)	263, 870
BtsIMutI	CAGTG	2 cut(s)	263, 870
Cac8I	GCNNGC	2 cut(s)	441, 781
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	113, 814
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	2 cut(s)	60, 681
CviJI	RGCY	9 cut(s)	123, 297, 302, 308, 725, 731, 794, 816, 869
CviKI_1	RGCY	9 cut(s)	123, 297, 302, 308, 725, 731, 794, 816, 869
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	2 cut(s)	124, 298
DpnI	GATC	5 cut(s)	9, 46, 165, 404, 525
DpnII	GATC	5 cut(s)	7, 44, 163, 402, 523
EaeI	YGGCCR	1 cut(s)	867
Ecl136II	GAGCTC	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	527, 817
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	527, 817
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	527, 817
FaeI	CATG	2 cut(s)	63, 684
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	2 cut(s)	59, 680
FauI	CCCGC	1 cut(s)	829
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	7 cut(s)	303, 306, 343, 444, 447, 726, 729
FokI	GGATG	2 cut(s)	697, 788
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	7 cut(s)	303, 306, 343, 444, 447, 726, 729
FspBI	CTAG	3 cut(s)	35, 189, 711
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	7 cut(s)	303, 306, 343, 444, 447, 726, 729
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	816, 869
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	63, 684
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	7 cut(s)	14, 23, 56, 74, 233, 635, 677
HphI	GGTGA	5 cut(s)	65, 173, 215, 778, 853
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	49, 367, 568
Hpy188III	TCNNGA	2 cut(s)	11, 90
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	3 cut(s)	96, 256, 282
HpyCH4III	ACNGT	3 cut(s)	209, 229, 414
HpyCH4V	TGCA	5 cut(s)	134, 149, 305, 332, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 443, 785, 855
HpyF3I	CTNAG	2 cut(s)	124, 298
Hsp92II	CATG	2 cut(s)	63, 684
HspAI	GCGC	1 cut(s)	437
Kzo9I	GATC	5 cut(s)	7, 44, 163, 402, 523
LmnI	GCTCC	2 cut(s)	294, 532
LpnPI	CCDG	7 cut(s)	258, 462, 602, 675, 702, 793, 875
Lsp1109I	GCAGC	4 cut(s)	289, 317, 430, 712
LweI	GCATC	2 cut(s)	675, 766
MaeI	CTAG	3 cut(s)	35, 189, 711
MaeIII	GTNAC	2 cut(s)	203, 589
MalI	GATC	5 cut(s)	9, 46, 165, 404, 525
MboI	GATC	5 cut(s)	7, 44, 163, 402, 523
MboII	GAAGA	1 cut(s)	556
MflI	RGATCY	3 cut(s)	7, 44, 402
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	6 cut(s)	152, 324, 351, 605, 657, 756
MlyI	GAGTC	2 cut(s)	32, 686
MmeI	TCCRAC	2 cut(s)	19, 521
MnlI	CCTC	6 cut(s)	35, 173, 473, 755, 784, 805
MseI	TTAA	3 cut(s)	155, 596, 738
MspR9I	CCNGG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	4 cut(s)	146, 443, 785, 855
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	5 cut(s)	7, 44, 163, 402, 523
NlaIII	CATG	2 cut(s)	63, 684
NlaIV	GGNNCC	2 cut(s)	404, 696
NmuCI	GTSAC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	806
PfeI	GAWTC	5 cut(s)	14, 56, 74, 233, 635
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	7 cut(s)	304, 307, 344, 445, 448, 727, 730
PleI	GAGTC	2 cut(s)	31, 685
PpsI	GAGTC	2 cut(s)	31, 685
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	404, 696
PspPI	GGNCC	2 cut(s)	113, 814
PstI	CTGCAG	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	3 cut(s)	7, 44, 402
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	155, 596, 738
SatI	GCNGC	7 cut(s)	303, 306, 343, 444, 447, 726, 729
Sau3AI	GATC	5 cut(s)	7, 44, 163, 402, 523
Sau96I	GGNCC	2 cut(s)	113, 814
SchI	GAGTC	2 cut(s)	32, 686
ScrFI	CCNGG	1 cut(s)	690
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	2 cut(s)	675, 766
SfcI	CTRYAG	2 cut(s)	195, 303
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	6 cut(s)	152, 324, 351, 605, 657, 756
SsiI	CCGC	4 cut(s)	342, 446, 728, 836
SspMI	CTAG	3 cut(s)	35, 189, 711
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	688
StyI	CCWWGG	2 cut(s)	527, 817
TaaI	ACNGT	3 cut(s)	209, 229, 414
TaqI	TCGA	3 cut(s)	91, 397, 881
TasI	AATT	6 cut(s)	152, 324, 351, 605, 657, 756
TauI	GCSGC	3 cut(s)	345, 449, 731
TfiI	GAWTC	5 cut(s)	14, 56, 74, 233, 635
Tru1I	TTAA	3 cut(s)	155, 596, 738
Tru9I	TTAA	3 cut(s)	155, 596, 738
TscAI	CASTG	2 cut(s)	263, 877
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	4 cut(s)	302, 305, 443, 725
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	573, 575, 716
TspGWI	ACGGA	2 cut(s)	395, 499
TspRI	CASTG	2 cut(s)	263, 877
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	324, 657
XspI	CTAG	3 cut(s)	35, 189, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.