Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

3948995 .. 3952163

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGAGCTGGAAGGAAGACACAAACCTTTATTATGCCTCCTAATGCAGACCTGGCACCCTACTCTGTACAAGCAAGACAGTTGAGAAGTAATCACCTTGGTGGAGTTATCTTTGGTTGCAAGAGCATCACAATGATGGAGTGTTTATCTAAACAACTCTTTGGTTTACCAGGTCCACACTTTTCATATGTGAAGAGTATTAGTCCTGGCTTGCCCCTCTTTCTCTTCAACTGTAATTATAGGACGCTTCATGGAATTTATGAGGCTGCTGGGCATGGCCAAATGAATATTGATCCATATGGTTGGACAACTGATGGATCAGTGAGAACACAATTTCCTGCACAGGTTCAAATTCGCATCCGGCTGCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCGATTATTGCAGACAGCTACTACAGTGCAAATAAATTCTGGTTTGAGCTTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGCGCGGTTGCACAATCTCTCCAGGTACTTCTGTACCGCAGAAAATACCAAAGAGGAAAACTGATCTTCCAACGCAACCCTCACGTAAGACAACAGTGGCAGCTTATTGGAAACTACAATCCATTTGAAGCTGTATTAGATGTGAAAGACGATGAACAGCACCTCATTTGCGCTAAACTGAAAGAGTTGTCTCTTCAACATGATCTCAACAGTGAATACCAAAAGGTGCCTTTGTCAATAGATGTTAAAGATAGTGCTATTGTTAATGCAACGCCTGTAGCAGTCAATTGGAATCCACCCGAACCATGGGGTTTAGTGGAGATGAGGGTAGAGAGGTCTCATTCCTGGTCTGAGAAGAAGAGTGGAGGGAGTCCTTGCTCATTGTCTGCGCTGAGTCCTCGATCCTCGTCTGATCAGTCACAAATCGGTAAGGCACAGTCTGAGATTAAACAGTTAAAAGATGATATGAAGTTTGAATCTGAGTCTACAGCATCCCTTGCACATATTGATGAAAAGCAGGCAGAGTGGTTGCATAAACAGTTGAAGCTATTTGATACATCAATCAAGAATAAGAGGTGCCTACGGGAGTATCTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

363

Amino Acids

41.23

Weight (kDa)

8.96

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	34 - 161	2.6e-48	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	55, 718, 1068
AccI	GTMKAC	1 cut(s)	977
AccII	CGCG	1 cut(s)	497
AciI	CCGC	2 cut(s)	497, 529
AclWI	GGATC	3 cut(s)	287, 325, 888
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	3 cut(s)	255, 351, 434
AfaI	GTAC	3 cut(s)	69, 519, 527
AfiI	CCNNNNNNNGG	1 cut(s)	798
AgsI	TTSAA	7 cut(s)	229, 350, 386, 620, 689, 968, 1036
AjnI	CCWGG	5 cut(s)	51, 169, 205, 513, 836
AleI	CACNNNNGTG	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	319, 351
AluBI	AGCT	7 cut(s)	8, 417, 448, 472, 595, 623, 1039
AluI	AGCT	7 cut(s)	8, 417, 448, 472, 595, 623, 1039
Alw26I	GTCTC	3 cut(s)	455, 687, 834
AlwI	GGATC	3 cut(s)	287, 325, 888
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	266, 364, 592
ApoI	RAATTY	3 cut(s)	255, 351, 434
AspLEI	GCGC	3 cut(s)	497, 665, 883
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	173
BaeI	ACNNNNGTAYC	5 cut(s)	509, 509, 542, 542, 1064
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	3 cut(s)	55, 718, 1068
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	253, 351, 604
BccI	CCATC	2 cut(s)	130, 308
BciT130I	CCWGG	5 cut(s)	53, 171, 207, 515, 838
BclI	TGATCA	2 cut(s)	451, 904
BcoDI	GTCTC	3 cut(s)	455, 687, 834
BfmI	CTRYAG	4 cut(s)	365, 421, 768, 978
BisI	GCNGC	3 cut(s)	267, 365, 593
BlsI	GCNGC	3 cut(s)	268, 366, 594
Bme1390I	CCNGG	5 cut(s)	53, 171, 207, 515, 838
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	57, 720, 1070
BmrFI	CCNGG	5 cut(s)	53, 171, 207, 515, 838
BmsI	GCATC	4 cut(s)	135, 366, 497, 992
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	577
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	2 cut(s)	97, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
BseBI	CCWGG	5 cut(s)	53, 171, 207, 515, 838
BseDI	CCNNGG	2 cut(s)	97, 797
BseGI	GGATG	2 cut(s)	357, 983
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseMII	CTCAG	5 cut(s)	450, 834, 875, 924, 963
BseXI	GCAGC	3 cut(s)	253, 351, 604
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	3 cut(s)	55, 718, 1068
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmAI	GTCTC	3 cut(s)	455, 687, 834
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	834
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
Bsp19I	CCATGG	1 cut(s)	797
BspACI	CCGC	2 cut(s)	497, 529
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	5 cut(s)	451, 835, 876, 925, 964
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	3 cut(s)	57, 720, 1070
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	3 cut(s)	287, 325, 888
BspT107I	GGYRCC	3 cut(s)	55, 718, 1068
BspTNI	GGTCTC	1 cut(s)	834
BsrGI	TGTACA	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	97, 797
BssMI	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
BssT1I	CCWWGG	2 cut(s)	97, 797
Bst2UI	CCWGG	5 cut(s)	53, 171, 207, 515, 838
Bst4CI	ACNGT	8 cut(s)	81, 233, 425, 588, 704, 930, 945, 1032
Bst6I	CTCTTC	4 cut(s)	188, 230, 690, 845
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstAUI	TGTACA	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	212, 1011
BstDEI	CTNAG	5 cut(s)	459, 843, 884, 933, 972
BstDSI	CCRYGG	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	357, 983
BstFNI	CGCG	1 cut(s)	497
BstHHI	GCGC	3 cut(s)	497, 665, 883
BstKTI	GATC	7 cut(s)	295, 320, 454, 558, 697, 896, 907
BstMAI	GTCTC	3 cut(s)	455, 687, 834
BstMBI	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 494, 989
BstNI	CCWGG	5 cut(s)	53, 171, 207, 515, 838
BstSCI	CCNGG	5 cut(s)	51, 169, 205, 513, 836
BstSFI	CTRYAG	4 cut(s)	365, 421, 768, 978
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	3 cut(s)	253, 351, 604
BstV2I	GAAGAC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	797
BtsCI	GGATG	2 cut(s)	357, 983
BtsI	GCAGTG	2 cut(s)	374, 377
BtsIMutI	CAGTG	6 cut(s)	327, 374, 377, 430, 593, 709
Cac8I	GCNNGC	2 cut(s)	212, 1011
CfoI	GCGC	3 cut(s)	497, 665, 883
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	68, 518, 526
CviAII	CATG	5 cut(s)	251, 275, 455, 692, 798
CviQI	GTAC	3 cut(s)	68, 518, 526
DdeI	CTNAG	5 cut(s)	459, 843, 884, 933, 972
DpnI	GATC	7 cut(s)	294, 319, 453, 557, 696, 895, 906
DpnII	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
DraI	TTTAAA	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	4 cut(s)	188, 230, 690, 845
EarI	CTCTTC	4 cut(s)	188, 230, 690, 845
Eco130I	CCWWGG	2 cut(s)	97, 797
Eco31I	GGTCTC	1 cut(s)	834
Eco47I	GGWCC	1 cut(s)	173
EcoRII	CCWGG	5 cut(s)	51, 169, 205, 513, 836
EcoT14I	CCWWGG	2 cut(s)	97, 797
ErhI	CCWWGG	2 cut(s)	97, 797
FaeI	CATG	5 cut(s)	254, 278, 458, 695, 801
FatI	CATG	5 cut(s)	250, 274, 454, 691, 797
FauNDI	CATATG	2 cut(s)	187, 298
FbaI	TGATCA	2 cut(s)	451, 904
FblI	GTMKAC	1 cut(s)	977
Fnu4HI	GCNGC	3 cut(s)	267, 365, 593
FokI	GGATG	2 cut(s)	344, 970
Fsp4HI	GCNGC	3 cut(s)	267, 365, 593
GlaI	GCGC	3 cut(s)	496, 664, 882
GluI	GCNGC	3 cut(s)	267, 365, 593
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	3 cut(s)	497, 665, 883
Hin1II	CATG	5 cut(s)	254, 278, 458, 695, 801
Hin6I	GCGC	3 cut(s)	495, 663, 881
HinP1I	GCGC	3 cut(s)	495, 663, 881
HinfI	GANTC	5 cut(s)	784, 862, 886, 968, 974
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	3 cut(s)	167, 176, 978
Hpy188I	TCNGA	4 cut(s)	844, 904, 934, 973
Hpy188III	TCNNGA	1 cut(s)	1057
Hpy8I	GTNNAC	3 cut(s)	167, 176, 978
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	8 cut(s)	81, 233, 425, 588, 704, 930, 945, 1032
HpyCH4IV	ACGT	1 cut(s)	576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 494, 989
HpyF3I	CTNAG	5 cut(s)	459, 843, 884, 933, 972
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	5 cut(s)	254, 278, 458, 695, 801
HspAI	GCGC	3 cut(s)	495, 663, 881
Ksp22I	TGATCA	2 cut(s)	451, 904
Kzo9I	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	3 cut(s)	253, 351, 604
LweI	GCATC	4 cut(s)	135, 366, 497, 992
MabI	ACCWGGT	1 cut(s)	169
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	909
MalI	GATC	7 cut(s)	294, 319, 453, 557, 696, 895, 906
MboI	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
MboII	GAAGA	7 cut(s)	28, 205, 217, 550, 677, 859, 862
MfeI	CAATTG	1 cut(s)	778
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	8 cut(s)	235, 255, 332, 351, 392, 434, 778, 1087
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	3 cut(s)	871, 895, 983
MmeI	TCCRAC	2 cut(s)	284, 586
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	5 cut(s)	396, 738, 756, 939, 947
MslI	CAYNNNNRTG	4 cut(s)	99, 131, 134, 999
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	5 cut(s)	53, 171, 207, 515, 838
MunI	CAATTG	1 cut(s)	778
MvaI	CCWGG	5 cut(s)	53, 171, 207, 515, 838
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	53, 494, 989
NcoI	CCATGG	1 cut(s)	797
NdeI	CATATG	2 cut(s)	187, 298
NdeII	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
NlaIII	CATG	5 cut(s)	254, 278, 458, 695, 801
NlaIV	GGNNCC	3 cut(s)	57, 720, 1070
NmuCI	GTSAC	1 cut(s)	909
OliI	CACNNNNGTG	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	784, 968
PkrI	GCNGC	3 cut(s)	268, 366, 594
PleI	GAGTC	3 cut(s)	870, 894, 982
PpsI	GAGTC	3 cut(s)	870, 894, 982
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	5 cut(s)	51, 169, 205, 513, 836
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	5 cut(s)	51, 169, 205, 513, 836
PspN4I	GGNNCC	3 cut(s)	57, 720, 1070
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	369
RsaI	GTAC	3 cut(s)	69, 519, 527
RsaNI	GTAC	3 cut(s)	68, 518, 526
RseI	CAYNNNNRTG	4 cut(s)	99, 131, 134, 999
SaqAI	TTAA	5 cut(s)	396, 738, 756, 939, 947
SatI	GCNGC	3 cut(s)	267, 365, 593
Sau3AI	GATC	7 cut(s)	292, 317, 451, 555, 694, 893, 904
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	3 cut(s)	871, 895, 983
ScrFI	CCNGG	5 cut(s)	53, 171, 207, 515, 838
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	4 cut(s)	135, 366, 497, 992
SfcI	CTRYAG	4 cut(s)	365, 421, 768, 978
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	4 cut(s)	99, 131, 134, 999
Sse9I	AATT	8 cut(s)	235, 255, 332, 351, 392, 434, 778, 1087
SsiI	CCGC	2 cut(s)	497, 529
SspI	AATATT	1 cut(s)	289
StyD4I	CCNGG	5 cut(s)	51, 169, 205, 513, 836
StyI	CCWWGG	2 cut(s)	97, 797
TaaI	ACNGT	8 cut(s)	81, 233, 425, 588, 704, 930, 945, 1032
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	1 cut(s)	892
TasI	AATT	8 cut(s)	235, 255, 332, 351, 392, 434, 778, 1087
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	784, 968
Tru1I	TTAA	5 cut(s)	396, 738, 756, 939, 947
Tru9I	TTAA	5 cut(s)	396, 738, 756, 939, 947
TscAI	CASTG	6 cut(s)	327, 374, 384, 430, 593, 709
TseFI	GTSAC	1 cut(s)	909
TseI	GCWGC	3 cut(s)	266, 364, 592
Tsp45I	GTSAC	1 cut(s)	909
TspDTI	ATGAA	6 cut(s)	174, 239, 299, 660, 974, 1017
TspRI	CASTG	6 cut(s)	327, 374, 384, 430, 593, 709
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	3 cut(s)	255, 351, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	795
XmiI	GTMKAC	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.