Rh1CG027700

DCD (Development and cell death) domain protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
5543388 .. 5561641
18254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG027700.1

Sequence Viewer

Length: 1038 bp
ATGACCCATCGCTGCTGCCCTTCTTCTTCGAACCCGCGAGCCAAGAACTTGCCGGCGGAGATCGTCAAAGTCGTTTTCCCTGACCACCTCATCCTCGCCGACCTTCCGGTGGCCAAGGGCATTGGGTCAGCCACCGCAGCTTCGCTTGTCAAGACAATCGGTCGCCGCTCCCGTCGTCAGCTCGGTGAACGTGTCCACTTTTGTGTTCGCCGTGATTTCCCGATTGCTATCTATGAAAGACTAGTATTGGGATGTGAAAATGGGAGCTGGAAGGAAGACACTTTATTATGCCTCCTAATGCAGACCTGGCACCCTACTCTGTACAAGCAAGACAGGGCGAAAACACTAGTTGGAAACTGCAATCCATTTGAAGCTGTATTAGATGTGAAAGACGCTGAACAAGATGAACAGCACCTCATTTGCACGAAACTGAAAGAGTTGTCTCTTCAACATGATCTCAACAGTGAATACCAAAAGGTGCCTTTGTCAATAGATGTTAAAGATAGTGCTATTGTTAATGCAACGCCTGTAGCAGTCAATTGGAATCCACCCGAACCATGGGGTTTAGTGGAGATGAGGGTAGAGAGGTCTCATTCCTGGTCTGAGAAGAAGAGTGGAGGGAGTCCTTGCTCATTGTCTGGGCTGAGTCCTCGATCCTCGTCTGATCAGTCACAAATCGATAAGTTGGTTCAAGAGGTAGAAGAGCTAAAGGTTTTCAAGAATGAACAAACTAAGAAGATAGGCTATTTGGAGTATAAGCTGACACTGGATACAGAGCAGGCACAGTCTGAGATTAAACAGTTAAAAGATGATATGAAGTTTGAATCTGAGTCTACACCATCCCTTGCACATATTGATGAAAAGCAGGCAGAGTCTGAAACTAAGTTAAAAGACGGTATGAAGTTGGAATCTGAATCTGTACCCTCCACACAAGAGAAGGATTATGCATTGTGTGATATGCTAGATGTGGATCCTAATGAGTCAATATATCTAGTCCGAATGATGGTGAATTATCATGAACTGAGTGCCCTAAGGTAA

Protein Analysis

345

Amino Acids

38.98

Weight (kDa)

5.6

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000666)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01660 AT5G01660 AT5G01660
fragaria_vesca FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis pycom04g14830 pycom12g16990
rosa_chinensis RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata RLG00000024916 RLG00000024917
rosa_multiflora Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 309, 478
AccBSI CCGCTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 833
AccII CGCG 1 cut(s) 37
AciI CCGC 4 cut(s) 35, 56, 135, 166
AclWI GGATC 3 cut(s) 648, 965, 978
AcoI YGGCCR 1 cut(s) 111
AfaI GTAC 2 cut(s) 323, 921
AfiI CCNNNNNNNGG 3 cut(s) 109, 558, 1003
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 5 cut(s) 371, 449, 692, 718, 824
AhdI GACNNNNNGTC 1 cut(s) 159
AhlI ACTAGT 2 cut(s) 241, 346
AjnI CCWGG 2 cut(s) 305, 596
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 6 cut(s) 140, 181, 267, 374, 706, 760
AluI AGCT 6 cut(s) 140, 181, 267, 374, 706, 760
Alw26I GTCTC 2 cut(s) 447, 594
AlwI GGATC 3 cut(s) 648, 965, 978
AlwNI CAGNNNCTG 1 cut(s) 875
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 3 cut(s) 12, 15, 137
AsuHPI GGTGA 2 cut(s) 197, 1018
AsuII TTCGAA 1 cut(s) 29
AxyI CCTNAGG 1 cut(s) 1031
BaeGI GKGCMC 1 cut(s) 1030
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 970
BanI GGYRCC 2 cut(s) 309, 478
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 2, 149
BccI CCATC 3 cut(s) 15, 847, 997
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 2 cut(s) 307, 598
BciVI GTATCC 1 cut(s) 763
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 447, 594
BcuI ACTAGT 2 cut(s) 241, 346
BfaI CTAG 4 cut(s) 242, 347, 962, 992
BfmI CTRYAG 1 cut(s) 528
BfuI GTATCC 1 cut(s) 763
BisI GCNGC 4 cut(s) 13, 16, 138, 166
BlsI GCNGC 4 cut(s) 14, 17, 139, 167
Bme1390I CCNGG 2 cut(s) 307, 598
BmeRI GACNNNNNGTC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 311, 480, 972
BmrFI CCNGG 2 cut(s) 307, 598
BpiI GAAGAC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 678
BsaBI GATNNNNATC 2 cut(s) 227, 969
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 114, 557
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 558, 1003
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 771
Bse21I CCTNAGG 1 cut(s) 1031
Bse8I GATNNNNATC 2 cut(s) 227, 969
BseBI CCWGG 2 cut(s) 307, 598
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 2 cut(s) 114, 557
BseGI GGATG 3 cut(s) 90, 257, 839
BseJI GATNNNNATC 2 cut(s) 227, 969
BseLI CCNNNNNNNGG 3 cut(s) 109, 558, 1003
BseMII CTCAG 5 cut(s) 594, 635, 780, 819, 1013
BseNI ACTGG 1 cut(s) 771
BseSI GKGCMC 1 cut(s) 1030
BseXI GCAGC 2 cut(s) 2, 149
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 2 cut(s) 309, 478
BshVI ATCGAT 1 cut(s) 678
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 53, 107
BslI CCNNNNNNNGG 3 cut(s) 109, 558, 1003
BsmAI GTCTC 2 cut(s) 447, 594
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 594
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 1030
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 5 cut(s) 60, 454, 653, 664, 970
Bsp19I CCATGG 1 cut(s) 557
BspACI CCGC 4 cut(s) 35, 56, 135, 166
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 5 cut(s) 595, 636, 781, 820, 1014
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 1 cut(s) 37
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 3 cut(s) 311, 480, 972
BspPI GGATC 3 cut(s) 648, 965, 978
BspQI GCTCTTC 1 cut(s) 696
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 2 cut(s) 309, 478
BspTNI GGTCTC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 1 cut(s) 771
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 114, 557
BssMI GATC 5 cut(s) 60, 454, 653, 664, 970
BssT1I CCWWGG 2 cut(s) 114, 557
Bst2UI CCWGG 2 cut(s) 307, 598
Bst4CI ACNGT 4 cut(s) 464, 786, 801, 896
Bst6I CTCTTC 3 cut(s) 450, 605, 696
BstAUI TGTACA 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 4 cut(s) 39, 54, 780, 867
BstDEI CTNAG 8 cut(s) 603, 644, 732, 789, 828, 882, 1022, 1031
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 3 cut(s) 90, 257, 839
BstFNI CGCG 1 cut(s) 37
BstKTI GATC 5 cut(s) 63, 457, 656, 667, 973
BstMAI GTCTC 2 cut(s) 447, 594
BstMBI GATC 5 cut(s) 60, 454, 653, 664, 970
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 137, 307
BstNI CCWGG 2 cut(s) 307, 598
BstSCI CCNGG 2 cut(s) 305, 596
BstSFI CTRYAG 1 cut(s) 528
BstSLI GKGCMC 1 cut(s) 1030
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 2, 149
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 970
BstYI RGATCY 1 cut(s) 970
Bsu15I ATCGAT 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 1031
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 1 cut(s) 113
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 1 cut(s) 557
BtsCI GGATG 3 cut(s) 90, 257, 839
BtsIMutI CAGTG 2 cut(s) 469, 764
Cac8I GCNNGC 4 cut(s) 39, 54, 780, 867
CaiI CAGNNNCTG 1 cut(s) 875
CciI TCATGA 1 cut(s) 1015
Cfr10I RCCGGY 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 1 cut(s) 401
Csp6I GTAC 2 cut(s) 322, 920
CviAII CATG 3 cut(s) 452, 558, 1016
CviQI GTAC 2 cut(s) 322, 920
DdeI CTNAG 8 cut(s) 603, 644, 732, 789, 828, 882, 1022, 1031
DpnI GATC 5 cut(s) 62, 456, 655, 666, 972
DpnII GATC 5 cut(s) 60, 454, 653, 664, 970
DriI GACNNNNNGTC 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 450, 605, 696
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 3 cut(s) 450, 605, 696
EciI GGCGGA 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 114, 557
Eco31I GGTCTC 1 cut(s) 594
Eco81I CCTNAGG 1 cut(s) 1031
EcoRII CCWGG 2 cut(s) 305, 596
EcoT14I CCWWGG 2 cut(s) 114, 557
EcoT22I ATGCAT 1 cut(s) 949
ErhI CCWWGG 2 cut(s) 114, 557
FaeI CATG 3 cut(s) 455, 561, 1019
FatI CATG 3 cut(s) 451, 557, 1015
FauI CCCGC 1 cut(s) 42
FbaI TGATCA 1 cut(s) 664
FblI GTMKAC 1 cut(s) 833
Fnu4HI GCNGC 4 cut(s) 13, 16, 138, 166
FokI GGATG 3 cut(s) 77, 264, 826
Fsp4HI GCNGC 4 cut(s) 13, 16, 138, 166
FspBI CTAG 4 cut(s) 242, 347, 962, 992
GluI GCNGC 4 cut(s) 13, 16, 138, 166
HaeIII GGCC 1 cut(s) 113
HapII CCGG 2 cut(s) 53, 107
HgaI GACGC 1 cut(s) 401
Hin1II CATG 3 cut(s) 455, 561, 1019
HinfI GANTC 9 cut(s) 544, 622, 646, 824, 830, 872, 908, 914, 980
HpaII CCGG 2 cut(s) 53, 107
HphI GGTGA 2 cut(s) 197, 1018
Hpy166II GTNNAC 3 cut(s) 188, 196, 834
Hpy188I TCNGA 7 cut(s) 604, 664, 790, 829, 877, 913, 998
Hpy188III TCNNGA 5 cut(s) 151, 220, 692, 718, 1016
Hpy8I GTNNAC 3 cut(s) 188, 196, 834
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 4 cut(s) 30, 113, 265, 931
HpyCH4III ACNGT 4 cut(s) 464, 786, 801, 896
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 6 cut(s) 301, 360, 423, 521, 848, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 307
HpyF3I CTNAG 8 cut(s) 603, 644, 732, 789, 828, 882, 1022, 1031
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 3 cut(s) 455, 561, 1019
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 5 cut(s) 60, 454, 653, 664, 970
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 2 cut(s) 173, 264
Lsp1109I GCAGC 2 cut(s) 2, 149
MaeI CTAG 4 cut(s) 242, 347, 962, 992
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 669
MalI GATC 5 cut(s) 62, 456, 655, 666, 972
MbiI CCGCTC 1 cut(s) 168
MboI GATC 5 cut(s) 60, 454, 653, 664, 970
MboII GAAGA 8 cut(s) 15, 18, 287, 437, 619, 622, 713, 748
MfeI CAATTG 1 cut(s) 538
MflI RGATCY 1 cut(s) 970
MhlI GDGCHC 1 cut(s) 1030
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 2 cut(s) 538, 1009
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 5 cut(s) 631, 655, 839, 881, 989
MmeI TCCRAC 2 cut(s) 331, 885
Mox20I TGGCCA 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 949
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 113
MseI TTAA 5 cut(s) 498, 516, 795, 803, 887
MslI CAYNNNNRTG 2 cut(s) 201, 855
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 2 cut(s) 53, 107
MspR9I CCNGG 2 cut(s) 307, 598
MunI CAATTG 1 cut(s) 538
MvaI CCWGG 2 cut(s) 307, 598
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 137, 307
NaeI GCCGGC 1 cut(s) 54
NcoI CCATGG 1 cut(s) 557
NdeII GATC 5 cut(s) 60, 454, 653, 664, 970
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 3 cut(s) 455, 561, 1019
NlaIV GGNNCC 3 cut(s) 311, 480, 972
NmuCI GTSAC 1 cut(s) 669
NsiI ATGCAT 1 cut(s) 949
NspV TTCGAA 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 201
PagI TCATGA 1 cut(s) 1015
PciSI GCTCTTC 1 cut(s) 696
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 169
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 4 cut(s) 544, 824, 908, 914
PkrI GCNGC 4 cut(s) 14, 17, 139, 167
PleI GAGTC 5 cut(s) 630, 654, 838, 880, 988
PpsI GAGTC 5 cut(s) 630, 654, 838, 880, 988
Psp6I CCWGG 2 cut(s) 305, 596
PspGI CCWGG 2 cut(s) 305, 596
PspN4I GGNNCC 3 cut(s) 311, 480, 972
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 1 cut(s) 970
RsaI GTAC 2 cut(s) 323, 921
RsaNI GTAC 2 cut(s) 322, 920
RseI CAYNNNNRTG 2 cut(s) 201, 855
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 5 cut(s) 498, 516, 795, 803, 887
SatI GCNGC 4 cut(s) 13, 16, 138, 166
Sau3AI GATC 5 cut(s) 60, 454, 653, 664, 970
SchI GAGTC 5 cut(s) 631, 655, 839, 881, 989
ScrFI CCNGG 2 cut(s) 307, 598
SduI GDGCHC 1 cut(s) 1030
SfcI CTRYAG 1 cut(s) 528
SfuI TTCGAA 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 201, 855
SpeI ACTAGT 2 cut(s) 241, 346
Sse9I AATT 2 cut(s) 538, 1009
SsiI CCGC 4 cut(s) 35, 56, 135, 166
SspMI CTAG 4 cut(s) 242, 347, 962, 992
StyD4I CCNGG 2 cut(s) 305, 596
StyI CCWWGG 2 cut(s) 114, 557
TaaI ACNGT 4 cut(s) 464, 786, 801, 896
TaiI ACGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 29, 652, 678
TaqII GACCGA 1 cut(s) 149
TasI AATT 2 cut(s) 538, 1009
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 4 cut(s) 544, 824, 908, 914
Tru1I TTAA 5 cut(s) 498, 516, 795, 803, 887
Tru9I TTAA 5 cut(s) 498, 516, 795, 803, 887
TscAI CASTG 2 cut(s) 469, 771
TseFI GTSAC 1 cut(s) 669
TseI GCWGC 3 cut(s) 12, 15, 137
Tsp45I GTSAC 1 cut(s) 669
TspDTI ATGAA 7 cut(s) 249, 420, 738, 830, 873, 914, 1032
TspRI CASTG 2 cut(s) 469, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 555
XmiI GTMKAC 1 cut(s) 833
XspI CTAG 4 cut(s) 242, 347, 962, 992
Zsp2I ATGCAT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.