Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Forward (+)

47858210 .. 47860228

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAATATTGATCCATATGGTTGGACAACTGATGGATCAGTGAGAACACAATTTCCTGCACAGGTTCAAATTCGCATCCGGCTGCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCAATTATTGCAGACAACTACTACAGTGCAAATAAATTCTGGTTTGAGATTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGCGCGGTTGTGCAATCTCTCCAGTTGGTTCAAGAGGTAGAAGAGCTAAAGGCTTTCAAGAATGAACAAACTAAGAAGATAGACTATTTGGAGTATAAGCCGGTGGTTGTTTTGAGCAAGAAACTTGGTTTTCTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

116

Amino Acids

13.48

Weight (kDa)

7.72

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	1 - 67	2.5e-20	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	215
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	2 cut(s)	5, 43
AcsI	RAATTY	2 cut(s)	69, 152
AgsI	TTSAA	4 cut(s)	68, 104, 242, 268
AloI	GAACNNNNNNTCC	2 cut(s)	37, 69
AluBI	AGCT	2 cut(s)	190, 256
AluI	AGCT	2 cut(s)	190, 256
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	2 cut(s)	5, 43
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	2 cut(s)	69, 152
AspLEI	GCGC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	83, 139
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmsI	GCATC	2 cut(s)	84, 215
BpmI	CTGGAG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	79, 311
BsmAI	GTCTC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	10, 35, 169
BspACI	CCGC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	2 cut(s)	5, 43
BspQI	GCTCTTC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	310
BssMI	GATC	3 cut(s)	10, 35, 169
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	177, 282
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	13, 38, 172
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	3 cut(s)	10, 35, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	83, 139
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	2 cut(s)	92, 95
BtsIMutI	CAGTG	4 cut(s)	45, 92, 95, 148
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	310
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	5 cut(s)	82, 190, 256, 263, 310
CviKI_1	RGCY	5 cut(s)	82, 190, 256, 263, 310
DdeI	CTNAG	2 cut(s)	177, 282
DpnI	GATC	3 cut(s)	12, 37, 171
DpnII	GATC	3 cut(s)	10, 35, 169
DraI	TTTAAA	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	176
FaiI	YATR	4 cut(s)	16, 18, 174, 306
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	83
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	215
HapII	CCGG	2 cut(s)	79, 311
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HpaII	CCGG	2 cut(s)	79, 311
Hpy188III	TCNNGA	2 cut(s)	242, 268
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	6 cut(s)	59, 85, 90, 128, 146, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	177, 282
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	10, 35, 169
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	47, 69, 92, 142, 245, 324
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	2 cut(s)	84, 215
MalI	GATC	3 cut(s)	12, 37, 171
MboI	GATC	3 cut(s)	10, 35, 169
MboII	GAAGA	2 cut(s)	263, 298
MluCI	AATT	5 cut(s)	50, 69, 110, 120, 152
MnlI	CCTC	1 cut(s)	238
MseI	TTAA	1 cut(s)	114
MspI	CCGG	2 cut(s)	79, 311
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	3 cut(s)	10, 35, 169
NlaIII	CATG	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	3 cut(s)	10, 35, 169
SetI	ASST	4 cut(s)	66, 192, 249, 258
SfaNI	GCATC	2 cut(s)	84, 215
SfcI	CTRYAG	2 cut(s)	83, 139
Sse9I	AATT	5 cut(s)	50, 69, 110, 120, 152
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	5 cut(s)	50, 69, 110, 120, 152
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	4 cut(s)	45, 92, 102, 148
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	17, 288
TspRI	CASTG	4 cut(s)	45, 92, 102, 148
XapI	RAATTY	2 cut(s)	69, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.