Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

15156035 .. 15159828

Gene Structure 3794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG073300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAATTTACACTTATGGGTACAAGAGGCTTGAAGTTTTGTCAGCTTTTACCAATGCTGTATTCGGATGTGAAAATGGGAGCTGGAAGGAAGACTCAAACCTTTATTTTGCCTCCTAATGCAAACCTAGCACCCTACCCTGTACAAGCAAGACAATTGAGAAGTAATCACCTTGGTGGAGTTATATTTTGGTGCAAGAGCAGCACAATGATGGAGTGTTTATCTAAACAACTCTTTGGTTTACCGGTGAGAACACAATTTCCTGCACAGGTTCAAATTCGCATCCGGCTGCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCAATTATTGCAGACAACTACTACAGTGCAAATAAATTCTGGTTTGAGATTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGCGCGGTTGTGCAATCTCTCCAGTTGGTTCAAGAGGTAGAAGAGCTAAAGGCTTTCAAGAATGAACAAACTAAGAAGATAGGCTATTTGGAGTATAAGCCGGGTGGTGTTGATAAAAGGGTTTCGTATCTTGAAGAGATAGGACTTTGCCCAGAAGCTGCAAATCACTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTCAGTCCAAAGCAAATAGAGAAGCTTCGCCAAGATAGGTTTGCATACCAATCCCTTCATTTGTGTAAAAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

241

Amino Acids

27.62

Weight (kDa)

8.75

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	84 - 136	4.8e-17	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	422
AciI	CCGC	1 cut(s)	422
AcsI	RAATTY	3 cut(s)	5, 276, 359
AfaI	GTAC	2 cut(s)	22, 144
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	6 cut(s)	34, 275, 311, 449, 475, 551
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AleI	CACNNNNGTG	1 cut(s)	174
AloI	GAACNNNNNNTCC	2 cut(s)	244, 276
AluBI	AGCT	6 cut(s)	46, 83, 397, 463, 575, 673
AluI	AGCT	6 cut(s)	46, 83, 397, 463, 575, 673
Alw26I	GTCTC	1 cut(s)	380
AlwNI	CAGNNNCTG	1 cut(s)	575
ApeKI	GCWGC	3 cut(s)	201, 289, 575
ApoI	RAATTY	3 cut(s)	5, 276, 359
AsiGI	ACCGGT	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	161, 259
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	213, 276, 562
BccI	CCATC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	2 cut(s)	290, 346
BisI	GCNGC	3 cut(s)	202, 290, 576
BlsI	GCNGC	3 cut(s)	203, 291, 577
Bme1390I	CCNGG	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	291, 422
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	73, 282
BseMII	CTCAG	2 cut(s)	375, 664
BseNI	ACTGG	1 cut(s)	439
BseXI	GCAGC	3 cut(s)	213, 276, 562
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	245, 286, 518
BsmAI	GTCTC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	422
BspCNI	CTCAG	2 cut(s)	376, 663
BspFNI	CGCG	1 cut(s)	422
BspMAI	CTGCAG	1 cut(s)	294
BspQI	GCTCTTC	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	2 cut(s)	453, 546
BstAUI	TGTACA	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	384, 489, 650
BstF5I	GGATG	2 cut(s)	73, 282
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 201, 419
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	2 cut(s)	290, 346
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	213, 276, 562
BstV2I	GAAGAC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	73, 282
BtsI	GCAGTG	2 cut(s)	299, 302
BtsIMutI	CAGTG	3 cut(s)	299, 302, 355
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	21, 143
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	2 cut(s)	380, 604
CviQI	GTAC	2 cut(s)	21, 143
DdeI	CTNAG	3 cut(s)	384, 489, 650
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
DraI	TTTAAA	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	453, 546
EarI	CTCTTC	2 cut(s)	453, 546
Eco130I	CCWWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	383, 607
FaiI	YATR	8 cut(s)	17, 185, 381, 513, 605, 617, 694, 724
FatI	CATG	2 cut(s)	379, 603
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	202, 290, 576
FokI	GGATG	2 cut(s)	80, 269
Fsp4HI	GCNGC	3 cut(s)	202, 290, 576
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	3 cut(s)	202, 290, 576
GsuI	CTGGAG	1 cut(s)	422
HapII	CCGG	3 cut(s)	245, 286, 518
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	2 cut(s)	383, 607
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	3 cut(s)	245, 286, 518
HphI	GGTGA	2 cut(s)	161, 259
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	449, 475, 548
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	81, 592, 713
HpyCH4III	ACNGT	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 201, 419
HpyF3I	CTNAG	3 cut(s)	384, 489, 650
Hsp92II	CATG	2 cut(s)	383, 607
HspAI	GCGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	376
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	3 cut(s)	213, 276, 562
LweI	GCATC	2 cut(s)	291, 422
MaeI	CTAG	1 cut(s)	128
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	4 cut(s)	103, 470, 505, 563
MfeI	CAATTG	1 cut(s)	155
MluCI	AATT	8 cut(s)	5, 155, 257, 276, 317, 327, 359, 609
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	20, 123, 445
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	2 cut(s)	174, 209
MspI	CCGG	3 cut(s)	245, 286, 518
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	128, 201, 419
NciI	CCSGG	1 cut(s)	519
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	383, 607
NspI	RCATGY	1 cut(s)	607
OliI	CACNNNNGTG	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	453
PinAI	ACCGGT	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	203, 291, 577
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	22, 144
RsaNI	GTAC	2 cut(s)	21, 143
RseI	CAYNNNNRTG	2 cut(s)	174, 209
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	202, 290, 576
Sau3AI	GATC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	519
SfaNI	GCATC	2 cut(s)	291, 422
SfcI	CTRYAG	2 cut(s)	290, 346
SmiMI	CAYNNNNRTG	2 cut(s)	174, 209
Sse9I	AATT	8 cut(s)	5, 155, 257, 276, 317, 327, 359, 609
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	350
TasI	AATT	8 cut(s)	5, 155, 257, 276, 317, 327, 359, 609
TatI	WGTACW	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	3 cut(s)	299, 309, 355
TseI	GCWGC	3 cut(s)	201, 289, 575
TspDTI	ATGAA	5 cut(s)	495, 611, 639, 660, 695
TspRI	CASTG	3 cut(s)	299, 309, 355
XapI	RAATTY	3 cut(s)	5, 276, 359
XceI	RCATGY	1 cut(s)	607
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.