Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Forward (+)

6796133 .. 6797244

Gene Structure 1112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGAGCTGGAAGGAAGACACAAACCTTTGTTGTGCCTCCTAATGTAGACGTGGCACCCTACTCTGTACAAGCAAGACAGTTGAGAAGTAATCACCTTGGTGGAGTGATCTTTGGTGGCAAGAGCAGCACAATGATGGAGTGTCTACCTAAACAACTCTTCGGTTTTCCGGGTCCACACTTTTCATATGTGAAGAATATTAGTCCTGGCTTGCCCCTCTTTCTCTTCAACTATAATGATAGGACGCTTCATGGAATTTATGAGGCTGCTAGCCATGGCCAAATGAATATTGATCCATATGGTTGGACAACTGATGAATCAGTGAGAACACAATTTCCTGCACAGGTTCAGATTTGCGTCCGGCTGCAGTGCAAACCACTGCTTGAAAGTCAGTTTAAACCGATTATTGTACACAACTACTACAGTGCAAATAAATTGTGGTTTGAGCTTGATCATGCTCAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGTACAGTTGCGCAATCGCTCCAGGTACTTATGTACCGCAGAAAATACCAAAGAGGAAAACTGATCTTCCAACGCAACCCTCACGTAAGACAACAGTGGAAGCTCAGTGGCTTAAACCACTCACTTCAGGGGCGAAAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

211

Amino Acids

24.12

Weight (kDa)

9.9

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	34 - 161	4.4e-48	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	2 cut(s)	48, 145
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	602
AfaI	GTAC	5 cut(s)	69, 411, 496, 519, 527
AgsI	TTSAA	2 cut(s)	229, 386
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	205, 513
AleI	CACNNNNGTG	1 cut(s)	99
AloI	GAACNNNNNNTCC	2 cut(s)	319, 351
AluBI	AGCT	4 cut(s)	8, 448, 472, 595
AluI	AGCT	4 cut(s)	8, 448, 472, 595
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	126, 266, 364
ApoI	RAATTY	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	173
BaeI	ACNNNNGTAYC	4 cut(s)	509, 509, 542, 542
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	138, 253, 351
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	207, 515
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	171
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	365, 421
BisI	GCNGC	3 cut(s)	127, 267, 365
BlsI	GCNGC	3 cut(s)	128, 268, 366
Bme1390I	CCNGG	3 cut(s)	171, 207, 515
Bme18I	GGWCC	1 cut(s)	173
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	57, 174
BmrFI	CCNGG	3 cut(s)	171, 207, 515
BmsI	GCATC	1 cut(s)	497
BmtI	GCTAGC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	97, 274
BseBI	CCWGG	2 cut(s)	207, 515
BseDI	CCNNGG	2 cut(s)	97, 274
BseMII	CTCAG	2 cut(s)	473, 610
BseXI	GCAGC	3 cut(s)	138, 253, 351
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	170, 361
BsnI	GGCC	1 cut(s)	279
Bsp1407I	TGTACA	3 cut(s)	67, 409, 494
Bsp143I	GATC	4 cut(s)	108, 292, 451, 555
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	472, 609
BspLI	GGNNCC	2 cut(s)	57, 174
BspMAI	CTGCAG	1 cut(s)	369
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	55
BsrGI	TGTACA	3 cut(s)	67, 409, 494
BssECI	CCNNGG	2 cut(s)	97, 274
BssMI	GATC	4 cut(s)	108, 292, 451, 555
BssT1I	CCWWGG	2 cut(s)	97, 274
Bst2UI	CCWGG	2 cut(s)	207, 515
Bst4CI	ACNGT	4 cut(s)	81, 425, 499, 588
Bst6I	CTCTTC	2 cut(s)	164, 230
BstAUI	TGTACA	3 cut(s)	67, 409, 494
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	212, 271
BstDEI	CTNAG	2 cut(s)	459, 596
BstDSI	CCRYGG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	4 cut(s)	111, 295, 454, 558
BstMBI	GATC	4 cut(s)	108, 292, 451, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	207, 515
BstSCI	CCNGG	3 cut(s)	169, 205, 513
BstSFI	CTRYAG	2 cut(s)	365, 421
BstV1I	GCAGC	3 cut(s)	138, 253, 351
BstV2I	GAAGAC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	52
BtsI	GCAGTG	2 cut(s)	374, 377
BtsIMutI	CAGTG	6 cut(s)	327, 374, 377, 430, 593, 604
Cac8I	GCNNGC	2 cut(s)	212, 271
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	2 cut(s)	253, 346
Csp6I	GTAC	5 cut(s)	68, 410, 495, 518, 526
CviAII	CATG	3 cut(s)	251, 275, 455
CviQI	GTAC	5 cut(s)	68, 410, 495, 518, 526
DdeI	CTNAG	2 cut(s)	459, 596
DpnI	GATC	4 cut(s)	110, 294, 453, 557
DpnII	GATC	4 cut(s)	108, 292, 451, 555
DraI	TTTAAA	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	164, 230
EarI	CTCTTC	2 cut(s)	164, 230
Eco130I	CCWWGG	2 cut(s)	97, 274
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	205, 513
EcoT14I	CCWWGG	2 cut(s)	97, 274
ErhI	CCWWGG	2 cut(s)	97, 274
FaeI	CATG	3 cut(s)	254, 278, 458
FatI	CATG	3 cut(s)	250, 274, 454
FauNDI	CATATG	2 cut(s)	187, 298
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	2 cut(s)	48, 145
Fnu4HI	GCNGC	3 cut(s)	127, 267, 365
Fsp4HI	GCNGC	3 cut(s)	127, 267, 365
FspBI	CTAG	1 cut(s)	270
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	3 cut(s)	127, 267, 365
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	170, 361
HgaI	GACGC	2 cut(s)	253, 346
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	3 cut(s)	254, 278, 458
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	170, 361
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	4 cut(s)	49, 146, 176, 412
Hpy188I	TCNGA	2 cut(s)	351, 462
Hpy8I	GTNNAC	4 cut(s)	49, 146, 176, 412
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	4 cut(s)	81, 425, 499, 588
HpyCH4IV	ACGT	2 cut(s)	51, 576
HpyCH4V	TGCA	4 cut(s)	341, 367, 372, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	2 cut(s)	459, 596
HpySE526I	ACGT	2 cut(s)	51, 576
Hsp92II	CATG	3 cut(s)	254, 278, 458
HspAI	GCGC	1 cut(s)	503
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	108, 292, 451, 555
LmnI	GCTCC	2 cut(s)	5, 516
LpnPI	CCDG	9 cut(s)	183, 192, 219, 329, 351, 374, 500, 527, 605
Lsp1109I	GCAGC	3 cut(s)	138, 253, 351
LweI	GCATC	1 cut(s)	497
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	51, 576
MalI	GATC	4 cut(s)	110, 294, 453, 557
MboI	GATC	4 cut(s)	108, 292, 451, 555
MboII	GAAGA	5 cut(s)	28, 151, 205, 217, 550
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	3 cut(s)	255, 332, 434
MluNI	TGGCCA	1 cut(s)	279
MmeI	TCCRAC	2 cut(s)	284, 586
MnlI	CCTC	5 cut(s)	48, 227, 256, 539, 582
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	2 cut(s)	396, 605
MslI	CAYNNNNRTG	2 cut(s)	99, 134
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	2 cut(s)	170, 361
MspR9I	CCNGG	3 cut(s)	171, 207, 515
MssI	GTTTAAAC	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	207, 515
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	274
NdeI	CATATG	2 cut(s)	187, 298
NdeII	GATC	4 cut(s)	108, 292, 451, 555
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	254, 278, 458
NlaIV	GGNNCC	2 cut(s)	57, 174
NsbI	TGCGCA	1 cut(s)	504
OliI	CACNNNNGTG	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	128, 268, 366
PmeI	GTTTAAAC	1 cut(s)	397
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	205, 513
PspGI	CCWGG	2 cut(s)	205, 513
PspN4I	GGNNCC	2 cut(s)	57, 174
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	369
RsaI	GTAC	5 cut(s)	69, 411, 496, 519, 527
RsaNI	GTAC	5 cut(s)	68, 410, 495, 518, 526
RseI	CAYNNNNRTG	2 cut(s)	99, 134
SaqAI	TTAA	2 cut(s)	396, 605
SatI	GCNGC	3 cut(s)	127, 267, 365
Sau3AI	GATC	4 cut(s)	108, 292, 451, 555
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	171, 207, 515
SfaNI	GCATC	1 cut(s)	497
SfcI	CTRYAG	2 cut(s)	365, 421
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	99, 134
Sse9I	AATT	3 cut(s)	255, 332, 434
SsiI	CCGC	1 cut(s)	529
SspI	AATATT	2 cut(s)	199, 289
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	3 cut(s)	169, 205, 513
StyI	CCWWGG	2 cut(s)	97, 274
TaaI	ACNGT	4 cut(s)	81, 425, 499, 588
TaiI	ACGT	2 cut(s)	54, 579
TasI	AATT	3 cut(s)	255, 332, 434
TatI	WGTACW	3 cut(s)	67, 409, 494
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	396, 605
Tru9I	TTAA	2 cut(s)	396, 605
TscAI	CASTG	6 cut(s)	327, 374, 384, 430, 593, 604
TseI	GCWGC	3 cut(s)	126, 266, 364
TspDTI	ATGAA	4 cut(s)	174, 239, 299, 330
TspRI	CASTG	6 cut(s)	327, 374, 384, 430, 593, 604
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	255
XmiI	GTMKAC	2 cut(s)	48, 145
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.