Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

22992306 .. 22996819

Gene Structure 4514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G020340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGATGGAGTGTTTATCTAAACAACTCTTTGTCCTGGCTGCTGGGCATGGCCAAATGAATATTGATCCATATGGTTGGACAACTGATGGATCAGTTCAAATTCGCATCCGGCTGCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCAATTATTGCAGACAACTACTACAGTGCAAATAAATTCTGGTTTGAAATTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTACACCTCATTTGCACGAAACTGAAAGAGTTGTCTCTTCAACATGATCTCAACAGTGAATACCAAAAGGTGCCTTTGTCAATAGATGTTAAAGATAGTGCTATTGTTAATGCAACGCCTGTAGCAGTCAATTGGAATCCACCCGAACCATGGGGTTTAGTGGAGATGAGGGTAGAGAGGTCTCATTCCTGGTCTGAGAAGAAGAGTGGAGGGAGTCCTTGCTCATTGTCTGAGCTGAGTCCTCGATCCTCGTCTGATCAGTCACAAATCGATAAGTTGGTTCAAGAGGTAGAAGAGCTAAAGGCTTTCAAGAATGAACAAACTAAGAAGATAGGCTATTTGGAGTATAAGCTGCAGGCACAGTCTGAGATTAAACAGTTAAAAGATGATATGAAGTTTGAATCTGAGTCTACACCATCCCTTGCACATATTGATGAAAAGCAGGCAGATTGGAATCCGAGTCTGTACCCTCCACACGAGAAGGATTATGCATTGTGTGATATGCTGGATGTGGATCCTAATGAGTCAATATATCTAGTTGGAATGATGGTGAATTATCATGAACAGAGTACAGGGATTACTTTAAAGATCATGGCGGGGATGAATGGGTGGAAGTGCTTAAAAGGGTTTCTTATCTTGAAGAGGCAATTACTTCTTTTCTATACTGGATTTTTTAATTGCTTTGTTGTATATTTCTTACAAAACTGGGCATTGGGTGGGTACCCATTTAGCCAATGTTTTAGGTTTCTAGTTTCATTTCTCTATGTGCAACATTACAGGTATGTTGTTATCACTTTCTCTGTTCAACGATCTCTTGTTCTTTTGTTTTCTCATTATGTAAATGTAACTGTCTTAGGGAAAAATACTTTTGTTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

370

Amino Acids

42.54

Weight (kDa)

6.22

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	13 - 77	2.4e-16	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	951
AccB1I	GGYRCC	2 cut(s)	301, 951
AccI	GTMKAC	1 cut(s)	641
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	5 cut(s)	59, 97, 471, 740, 753
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	99, 182
AfaI	GTAC	3 cut(s)	698, 802, 953
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	9 cut(s)	98, 134, 194, 272, 515, 541, 632, 871, 1037
AjnI	CCWGG	2 cut(s)	33, 419
AluBI	AGCT	5 cut(s)	220, 466, 529, 583, 1109
AluI	AGCT	5 cut(s)	220, 466, 529, 583, 1109
Alw26I	GTCTC	3 cut(s)	203, 270, 417
AlwI	GGATC	5 cut(s)	59, 97, 471, 740, 753
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	4 cut(s)	38, 112, 583, 1106
ApoI	RAATTY	2 cut(s)	99, 182
Asp718I	GGTACC	1 cut(s)	951
AsuHPI	GGTGA	1 cut(s)	793
BalI	TGGCCA	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	745
BanI	GGYRCC	2 cut(s)	301, 951
BauI	CACGAG	1 cut(s)	707
BbvI	GCAGC	3 cut(s)	25, 99, 570
BccI	CCATC	3 cut(s)	80, 655, 772
BciT130I	CCWGG	2 cut(s)	35, 421
BclI	TGATCA	2 cut(s)	199, 487
BcoDI	GTCTC	3 cut(s)	203, 270, 417
BfaI	CTAG	2 cut(s)	767, 980
BfmI	CTRYAG	4 cut(s)	113, 169, 351, 584
BisI	GCNGC	4 cut(s)	39, 113, 584, 1107
BlsI	GCNGC	4 cut(s)	40, 114, 585, 1108
Bme1390I	CCNGG	2 cut(s)	35, 421
BmiI	GGNNCC	3 cut(s)	303, 747, 953
BmrFI	CCNGG	2 cut(s)	35, 421
BmrI	ACTGGG	1 cut(s)	946
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	946
Bsa29I	ATCGAT	1 cut(s)	501
BsaBI	GATNNNNATC	2 cut(s)	684, 744
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	901, 941
Bse8I	GATNNNNATC	2 cut(s)	684, 744
BseBI	CCWGG	2 cut(s)	35, 421
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	4 cut(s)	105, 647, 745, 837
BseJI	GATNNNNATC	2 cut(s)	684, 744
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	6 cut(s)	198, 417, 453, 458, 588, 627
BseNI	ACTGG	2 cut(s)	901, 941
BseXI	GCAGC	3 cut(s)	25, 99, 570
BseYI	CCCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	2 cut(s)	301, 951
BshVI	ATCGAT	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	3 cut(s)	203, 270, 417
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	417
Bsp143I	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	6 cut(s)	199, 418, 454, 459, 589, 628
BspDI	ATCGAT	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	3 cut(s)	303, 747, 953
BspMAI	CTGCAG	2 cut(s)	117, 588
BspPI	GGATC	5 cut(s)	59, 97, 471, 740, 753
BspQI	GCTCTTC	1 cut(s)	519
BspT107I	GGYRCC	2 cut(s)	301, 951
BspTNI	GGTCTC	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	901, 941
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
BssSI	CACGAG	1 cut(s)	707
BssT1I	CCWWGG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	707
Bst2UI	CCWGG	2 cut(s)	35, 421
Bst4CI	ACNGT	5 cut(s)	173, 287, 594, 609, 1081
Bst6I	CTCTTC	4 cut(s)	273, 428, 519, 866
BstC8I	GCNNGC	2 cut(s)	588, 675
BstDEI	CTNAG	8 cut(s)	207, 426, 462, 467, 555, 597, 636, 1084
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	4 cut(s)	105, 647, 745, 837
BstKTI	GATC	9 cut(s)	67, 92, 202, 280, 479, 490, 748, 822, 1043
BstMAI	GTCTC	3 cut(s)	203, 270, 417
BstMBI	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
BstNI	CCWGG	2 cut(s)	35, 421
BstSCI	CCNGG	2 cut(s)	33, 419
BstSFI	CTRYAG	4 cut(s)	113, 169, 351, 584
BstV1I	GCAGC	3 cut(s)	25, 99, 570
BstX2I	RGATCY	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	745
Bsu15I	ATCGAT	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	105, 647, 745, 837
BtsI	GCAGTG	2 cut(s)	122, 125
BtsIMutI	CAGTG	4 cut(s)	122, 125, 178, 292
Cac8I	GCNNGC	2 cut(s)	588, 675
CciI	TCATGA	1 cut(s)	790
ClaI	ATCGAT	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	697, 801, 952
CviAII	CATG	6 cut(s)	47, 203, 275, 381, 791, 823
CviQI	GTAC	3 cut(s)	697, 801, 952
DdeI	CTNAG	8 cut(s)	207, 426, 462, 467, 555, 597, 636, 1084
DpnI	GATC	9 cut(s)	66, 91, 201, 279, 478, 489, 747, 821, 1042
DpnII	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
DraI	TTTAAA	2 cut(s)	145, 816
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	4 cut(s)	273, 428, 519, 866
EarI	CTCTTC	4 cut(s)	273, 428, 519, 866
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	33, 419
EcoT14I	CCWWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	6 cut(s)	50, 206, 278, 384, 794, 826
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FatI	CATG	6 cut(s)	46, 202, 274, 380, 790, 822
FauI	CCCGC	1 cut(s)	820
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	2 cut(s)	199, 487
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	4 cut(s)	39, 113, 584, 1107
FokI	GGATG	4 cut(s)	92, 634, 752, 844
Fsp4HI	GCNGC	4 cut(s)	39, 113, 584, 1107
FspBI	CTAG	2 cut(s)	767, 980
GluI	GCNGC	4 cut(s)	39, 113, 584, 1107
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	6 cut(s)	50, 206, 278, 384, 794, 826
HinfI	GANTC	8 cut(s)	367, 445, 469, 632, 638, 685, 691, 755
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	6 cut(s)	427, 463, 487, 598, 637, 690
Hpy188III	TCNNGA	4 cut(s)	515, 541, 791, 868
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	1 cut(s)	706
HpyCH4III	ACNGT	5 cut(s)	173, 287, 594, 609, 1081
HpyF3I	CTNAG	8 cut(s)	207, 426, 462, 467, 555, 597, 636, 1084
Hsp92II	CATG	6 cut(s)	50, 206, 278, 384, 794, 826
KpnI	GGTACC	1 cut(s)	955
Ksp22I	TGATCA	2 cut(s)	199, 487
Kzo9I	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
LguI	GCTCTTC	1 cut(s)	519
Lsp1109I	GCAGC	3 cut(s)	25, 99, 570
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	767, 980
MaeIII	GTNAC	3 cut(s)	231, 492, 1075
MalI	GATC	9 cut(s)	66, 91, 201, 279, 478, 489, 747, 821, 1042
MboI	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
MboII	GAAGA	6 cut(s)	260, 442, 445, 536, 571, 883
MfeI	CAATTG	1 cut(s)	361
MflI	RGATCY	1 cut(s)	745
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	9 cut(s)	99, 140, 150, 182, 195, 361, 784, 878, 907
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	5 cut(s)	454, 478, 647, 700, 764
MmeI	TCCRAC	2 cut(s)	56, 751
MnlI	CCTC	9 cut(s)	248, 393, 402, 434, 483, 490, 511, 711, 867
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	724
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	8 cut(s)	144, 321, 339, 603, 611, 815, 851, 906
MslI	CAYNNNNRTG	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	35, 421
MunI	CAATTG	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	35, 421
NcoI	CCATGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
NlaIII	CATG	6 cut(s)	50, 206, 278, 384, 794, 826
NlaIV	GGNNCC	3 cut(s)	303, 747, 953
NmuCI	GTSAC	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	724
PagI	TCATGA	1 cut(s)	790
PciSI	GCTCTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	367, 632, 685
PkrI	GCNGC	4 cut(s)	40, 114, 585, 1108
PleI	GAGTC	5 cut(s)	453, 477, 646, 699, 763
PpsI	GAGTC	5 cut(s)	453, 477, 646, 699, 763
Psp6I	CCWGG	2 cut(s)	33, 419
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	33, 419
PspN4I	GGNNCC	3 cut(s)	303, 747, 953
PstI	CTGCAG	2 cut(s)	117, 588
PsuI	RGATCY	1 cut(s)	745
RsaI	GTAC	3 cut(s)	698, 802, 953
RsaNI	GTAC	3 cut(s)	697, 801, 952
RseI	CAYNNNNRTG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	8 cut(s)	144, 321, 339, 603, 611, 815, 851, 906
SatI	GCNGC	4 cut(s)	39, 113, 584, 1107
Sau3AI	GATC	9 cut(s)	64, 89, 199, 277, 476, 487, 745, 819, 1040
SchI	GAGTC	5 cut(s)	454, 478, 647, 700, 764
ScrFI	CCNGG	2 cut(s)	35, 421
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	4 cut(s)	113, 169, 351, 584
SmiMI	CAYNNNNRTG	1 cut(s)	663
Sse9I	AATT	9 cut(s)	99, 140, 150, 182, 195, 361, 784, 878, 907
SsiI	CCGC	1 cut(s)	827
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	2 cut(s)	767, 980
StyD4I	CCNGG	2 cut(s)	33, 419
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	5 cut(s)	173, 287, 594, 609, 1081
TaqI	TCGA	2 cut(s)	475, 501
TasI	AATT	9 cut(s)	99, 140, 150, 182, 195, 361, 784, 878, 907
TatI	WGTACW	1 cut(s)	800
TfiI	GAWTC	3 cut(s)	367, 632, 685
Tru1I	TTAA	8 cut(s)	144, 321, 339, 603, 611, 815, 851, 906
Tru9I	TTAA	8 cut(s)	144, 321, 339, 603, 611, 815, 851, 906
TscAI	CASTG	4 cut(s)	122, 132, 178, 292
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	4 cut(s)	38, 112, 583, 1106
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	7 cut(s)	71, 561, 638, 681, 807, 848, 975
TspRI	CASTG	4 cut(s)	122, 132, 178, 292
XapI	RAATTY	2 cut(s)	99, 182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	2 cut(s)	767, 980
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.