Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

5504619 .. 5511205

Gene Structure 6587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGAGCTGGAAGGAAGACACAAACCTTTATTATGCCTCCTAATGCAGACCTGGCACCCTACTCTGTACAAGCAAGACAGTTGAGAAGTAATCACCTTGGTGGAGTTATCTTTGGTTGCAAGAGCAGCACAATCATGGAGTGTCTATCTAAACAACTCTTTGGTTTACCGGGTCCACACTTTTCATATGTGAAGAATATTAGTCCTGGCTTGCCCCTCTTTCTCTTCAACTGTAATGATAGGACGCTTCATGGAATTTATGAGGCTGCTGGGCATGGCCAAATGAATATTGATCCATATGGTTGGACAACTGATGGATCAATGAGAACACAATTTCTCGCACAGGTTCAAATTCGCATCCGGCTGCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCGATTATTGCAGACAACTACTACAGTGCAAATAAATTCTGGTTTGAGCTTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGCGCGGTTGCCCAATCTCTCCAGGTACTTCTGTACCGCAGAAAATACCAAAGAGGAAAACTGATCTTCCAACGCAACCCTCACGTAAGACAACAGTGGCAGCTTAGTGGCTTAAACCACTCACTTCAGGGGCGAAAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

211

Amino Acids

24.03

Weight (kDa)

9.82

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	34 - 161	1.8e-49	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	497
AciI	CCGC	2 cut(s)	497, 529
AclWI	GGATC	2 cut(s)	287, 325
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	3 cut(s)	255, 351, 434
AcuI	CTGAAG	1 cut(s)	602
AfaI	GTAC	3 cut(s)	69, 519, 527
AgsI	TTSAA	3 cut(s)	229, 350, 386
AjnI	CCWGG	3 cut(s)	51, 205, 513
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	8, 448, 472, 595
AluI	AGCT	4 cut(s)	8, 448, 472, 595
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	287, 325
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	4 cut(s)	126, 266, 364, 592
ApoI	RAATTY	3 cut(s)	255, 351, 434
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	173
BaeI	ACNNNNGTAYC	4 cut(s)	509, 509, 542, 542
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	4 cut(s)	138, 253, 351, 604
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	3 cut(s)	53, 207, 515
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	634
BfmI	CTRYAG	2 cut(s)	365, 421
BisI	GCNGC	4 cut(s)	127, 267, 365, 593
BlsI	GCNGC	4 cut(s)	128, 268, 366, 594
Bme1390I	CCNGG	4 cut(s)	53, 171, 207, 515
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	57, 174
BmrFI	CCNGG	4 cut(s)	53, 171, 207, 515
BmsI	GCATC	2 cut(s)	366, 497
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	53, 207, 515
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	450
BseXI	GCAGC	4 cut(s)	138, 253, 351, 604
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	170, 361
BsmAI	GTCTC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	292, 317, 451, 555
BspACI	CCGC	2 cut(s)	497, 529
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	57, 174
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	2 cut(s)	287, 325
BspT107I	GGYRCC	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	4 cut(s)	292, 317, 451, 555
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	3 cut(s)	53, 207, 515
Bst4CI	ACNGT	4 cut(s)	81, 233, 425, 588
Bst6I	CTCTTC	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	459, 596
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	4 cut(s)	295, 320, 454, 558
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	292, 317, 451, 555
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 126, 494
BstNI	CCWGG	3 cut(s)	53, 207, 515
BstSCI	CCNGG	4 cut(s)	51, 169, 205, 513
BstSFI	CTRYAG	2 cut(s)	365, 421
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	4 cut(s)	138, 253, 351, 604
BstV2I	GAAGAC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	2 cut(s)	374, 377
BtsIMutI	CAGTG	4 cut(s)	374, 377, 430, 593
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	68, 518, 526
CviAII	CATG	4 cut(s)	136, 251, 275, 455
CviJI	RGCY	9 cut(s)	8, 210, 266, 279, 364, 448, 472, 595, 603
CviKI_1	RGCY	9 cut(s)	8, 210, 266, 279, 364, 448, 472, 595, 603
CviQI	GTAC	3 cut(s)	68, 518, 526
DdeI	CTNAG	2 cut(s)	459, 596
DpnI	GATC	4 cut(s)	294, 319, 453, 557
DpnII	GATC	4 cut(s)	292, 317, 451, 555
DraI	TTTAAA	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	602
EcoRII	CCWGG	3 cut(s)	51, 205, 513
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	139, 254, 278, 458
FatI	CATG	4 cut(s)	135, 250, 274, 454
FauNDI	CATATG	2 cut(s)	187, 298
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	4 cut(s)	127, 267, 365, 593
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	127, 267, 365, 593
FspBI	CTAG	1 cut(s)	634
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	4 cut(s)	127, 267, 365, 593
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	170, 361
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	4 cut(s)	139, 254, 278, 458
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HpaII	CCGG	2 cut(s)	170, 361
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	167, 176
Hpy8I	GTNNAC	2 cut(s)	167, 176
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	4 cut(s)	81, 233, 425, 588
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	6 cut(s)	47, 120, 367, 372, 410, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 126, 494
HpyF3I	CTNAG	2 cut(s)	459, 596
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	4 cut(s)	139, 254, 278, 458
HspAI	GCGC	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	292, 317, 451, 555
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	4 cut(s)	138, 253, 351, 604
LweI	GCATC	2 cut(s)	366, 497
MaeI	CTAG	1 cut(s)	634
MaeII	ACGT	1 cut(s)	576
MalI	GATC	4 cut(s)	294, 319, 453, 557
MboI	GATC	4 cut(s)	292, 317, 451, 555
MboII	GAAGA	4 cut(s)	28, 205, 217, 550
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	5 cut(s)	255, 332, 351, 392, 434
MluNI	TGGCCA	1 cut(s)	279
MmeI	TCCRAC	2 cut(s)	284, 586
MnlI	CCTC	5 cut(s)	48, 227, 256, 539, 582
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	2 cut(s)	396, 605
MslI	CAYNNNNRTG	2 cut(s)	99, 134
Msp20I	TGGCCA	1 cut(s)	279
MspI	CCGG	2 cut(s)	170, 361
MspR9I	CCNGG	4 cut(s)	53, 171, 207, 515
MvaI	CCWGG	3 cut(s)	53, 207, 515
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	53, 126, 494
NciI	CCSGG	1 cut(s)	171
NdeI	CATATG	2 cut(s)	187, 298
NdeII	GATC	4 cut(s)	292, 317, 451, 555
NlaIII	CATG	4 cut(s)	139, 254, 278, 458
NlaIV	GGNNCC	2 cut(s)	57, 174
OliI	CACNNNNGTG	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	128, 268, 366, 594
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	3 cut(s)	51, 205, 513
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	3 cut(s)	51, 205, 513
PspN4I	GGNNCC	2 cut(s)	57, 174
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	369
RsaI	GTAC	3 cut(s)	69, 519, 527
RsaNI	GTAC	3 cut(s)	68, 518, 526
RseI	CAYNNNNRTG	2 cut(s)	99, 134
SaqAI	TTAA	2 cut(s)	396, 605
SatI	GCNGC	4 cut(s)	127, 267, 365, 593
Sau3AI	GATC	4 cut(s)	292, 317, 451, 555
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	4 cut(s)	53, 171, 207, 515
SfaNI	GCATC	2 cut(s)	366, 497
SfcI	CTRYAG	2 cut(s)	365, 421
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	99, 134
Sse9I	AATT	5 cut(s)	255, 332, 351, 392, 434
SsiI	CCGC	2 cut(s)	497, 529
SspI	AATATT	2 cut(s)	199, 289
SspMI	CTAG	1 cut(s)	634
StyD4I	CCNGG	4 cut(s)	51, 169, 205, 513
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	4 cut(s)	81, 233, 425, 588
TaiI	ACGT	1 cut(s)	579
TasI	AATT	5 cut(s)	255, 332, 351, 392, 434
TatI	WGTACW	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	396, 605
Tru9I	TTAA	2 cut(s)	396, 605
TscAI	CASTG	4 cut(s)	374, 384, 430, 593
TseI	GCWGC	4 cut(s)	126, 266, 364, 592
TspDTI	ATGAA	3 cut(s)	174, 239, 299
TspRI	CASTG	4 cut(s)	374, 384, 430, 593
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	3 cut(s)	255, 351, 434
XspI	CTAG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.