Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

26463487 .. 26466427

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G285200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGGGCCGGAAGGAAAACAGAGACCTTTACTGCACCGCCTAATCAAGGCCTAGCAACCTACACTACATCCATGAGAAATTTGATCAAGAAACACCTTGGTGGAGTCATATTTGGTTGCAAGGACATCACAATCGATGAATGTCTATCTAAACAACTCTTTGGCTTACCAGCTGCACACTTTCTATATGTACAGAACATTTCTCCGGGCTTGCCACTTTTTCTCTTCAATTACACTGATAGGAAACTTCACGGAATCTATGAGGCTGCTGGCTATGGGCAAATGAATATCAATCCCTGTGGATGGACCACTGATGGTTCAAATACTACGCCATTTCCTGCACAGGTTAAGTTCCATGCTCGGCTGCACTGCCGGCCACTGCCTGAAAGTCAGTTTAGAGGGATAATTGCCGACAACTACTACAATGAGTTTCATTTCTGGTTTGAGCTTGATCACGCTCAAACAAGGAAGCTCACATCTAAGTTAGCATCTGGAGCAGTTGCTCCAAGTACTCCTGCAGTACAGATATATAAGGGAGCATCTGTAGCAGTTTCTCCAAGTCCTTCTGTACCTCAGAAATCTCAGTTAGCATCTGTAGAAGTTGCGCCAAGGACTTCTGCACCTCAGATATCTAAGTTAGCATCTGTAGGAGTTGCTCCAAGGACTTCTGAACCACAGAAAACACTGAATTGGAGAAGTTGTTTTGTGGCTCTTCCCTCGCATGACACAATAGAGGAACCTGAGTGGCTTGAAAAACTTACATCAGAGGCTGAGGATTTGAGTAATTCATGTCAAAATTTGGATGTCCCAATTGCGTTTGGAAGATACGATCCATTCAAACCCCAATTAGATGTGAAGGATGCTGAACAAGTGGGGCAGGAACGTGTATACAAAAAACTGAAGGATTTAGCGATCCATGATAATCTTAACAATGAATGTCAAGACATGTCTTTGTCAGGAGATGTTGAAGATAGTGTTGCAGGAAGTTCTCACTCCTCGTTTGATCAAAGAAGCAGAGAGAGTCTTTGCTCCTTGTCTGCACAGAAGAGTGGAGAGATCCCCCTATCCTTGTTTGAGCATCAGGCACTCATAGCTAAGTTGATTGAAGAGGTGGGAGAGCTAAAGGCTTTTAAGACGGAACAATCTCAGAAGATTAGCTGTTTGGAGTACAAGCTGGAGCAGGCAGAGACTGAAATTCAACGCTTGAAAGTTTGGTTTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

409

Amino Acids

45.29

Weight (kDa)

5.82

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	888
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	3 cut(s)	824, 907, 1051
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	3 cut(s)	79, 796, 1194
AcuI	CTGAAG	1 cut(s)	920
AfaI	GTAC	5 cut(s)	192, 511, 522, 570, 1169
AfiI	CCNNNNNNNGG	2 cut(s)	47, 303
AflIII	ACRYGT	2 cut(s)	883, 945
AgsI	TTSAA	9 cut(s)	229, 321, 752, 838, 968, 1106, 1199, 1207, 1220
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	7 cut(s)	173, 448, 472, 1094, 1120, 1158, 1174
AluI	AGCT	7 cut(s)	173, 448, 472, 1094, 1120, 1158, 1174
Alw26I	GTCTC	2 cut(s)	17, 1181
AlwI	GGATC	3 cut(s)	824, 907, 1051
AlwNI	CAGNNNCTG	2 cut(s)	770, 1190
AoxI	GGCC	3 cut(s)	6, 49, 374
ApeKI	GCWGC	3 cut(s)	173, 266, 364
ApoI	RAATTY	3 cut(s)	79, 796, 1194
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	6, 306
AsuC2I	CCSGG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	771
BbvI	GCAGC	3 cut(s)	160, 253, 351
BccI	CCATC	2 cut(s)	297, 308
BclI	TGATCA	3 cut(s)	84, 451, 1003
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	17, 1181
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	4 cut(s)	516, 543, 594, 645
BisI	GCNGC	3 cut(s)	174, 267, 365
BlsI	GCNGC	3 cut(s)	175, 268, 366
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	6, 306
BmiI	GGNNCC	2 cut(s)	7, 738
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	6 cut(s)	497, 548, 599, 650, 850, 1087
BpmI	CTGGAG	2 cut(s)	513, 1196
Bpu10I	CCTNAGC	1 cut(s)	771
BpuMI	CCSGG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	97, 608, 659
BsaXI	ACNNNNNCTCC	4 cut(s)	528, 558, 685, 715
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 303
Bse118I	RCCGGY	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	97, 608, 659
BseGI	GGATG	4 cut(s)	68, 308, 808, 865
BseLI	CCNNNNNNNGG	2 cut(s)	47, 303
BseMII	CTCAG	6 cut(s)	587, 596, 638, 732, 762, 1160
BseRI	GAGGAG	1 cut(s)	985
BseXI	GCAGC	3 cut(s)	160, 253, 351
BsgI	GTGCAG	6 cut(s)	18, 159, 324, 350, 603, 1023
BshFI	GGCC	3 cut(s)	8, 51, 376
BshVI	ATCGAT	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	9, 206, 373
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	2 cut(s)	47, 303
BsmAI	GTCTC	2 cut(s)	17, 1181
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	3 cut(s)	8, 51, 376
Bso31I	GGTCTC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	3 cut(s)	8, 51, 376
BspCNI	CTCAG	6 cut(s)	586, 595, 637, 733, 763, 1159
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	7, 738
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	3 cut(s)	824, 907, 1051
BspQI	GCTCTTC	1 cut(s)	717
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	97, 608, 659
BssMI	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
BssNAI	GTATAC	1 cut(s)	889
BssT1I	CCWWGG	3 cut(s)	97, 608, 659
Bst1107I	GTATAC	1 cut(s)	889
Bst6I	CTCTTC	4 cut(s)	230, 717, 1040, 1101
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	4 cut(s)	212, 271, 374, 1182
BstDEI	CTNAG	9 cut(s)	480, 573, 582, 624, 633, 741, 771, 1095, 1146
BstENI	CCTNNNNNAGG	1 cut(s)	45
BstF5I	GGATG	4 cut(s)	68, 308, 808, 865
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	6 cut(s)	87, 454, 832, 915, 1006, 1059
BstMAI	GTCTC	2 cut(s)	17, 1181
BstMBI	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
BstMWI	GCNNNNNNNGC	4 cut(s)	373, 494, 545, 1091
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	4 cut(s)	516, 543, 594, 645
BstV1I	GCAGC	3 cut(s)	160, 253, 351
BstX2I	RGATCY	1 cut(s)	1056
BstYI	RGATCY	1 cut(s)	1056
BstZ17I	GTATAC	1 cut(s)	889
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	8, 51, 376
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	4 cut(s)	68, 308, 808, 865
BtsI	GCAGTG	2 cut(s)	367, 377
BtsIMutI	CAGTG	5 cut(s)	234, 309, 367, 377, 683
Cac8I	GCNNGC	4 cut(s)	212, 271, 374, 1182
CaiI	CAGNNNCTG	2 cut(s)	770, 1190
CfoI	GCGC	1 cut(s)	607
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	6, 306
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	5 cut(s)	191, 510, 521, 569, 1168
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	6 cut(s)	73, 356, 722, 789, 917, 946
CviQI	GTAC	5 cut(s)	191, 510, 521, 569, 1168
DdeI	CTNAG	9 cut(s)	480, 573, 582, 624, 633, 741, 771, 1095, 1146
DpnI	GATC	6 cut(s)	86, 453, 831, 914, 1005, 1058
DpnII	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	4 cut(s)	230, 717, 1040, 1101
EarI	CTCTTC	4 cut(s)	230, 717, 1040, 1101
Eco130I	CCWWGG	3 cut(s)	97, 608, 659
Eco147I	AGGCCT	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	920
EcoNI	CCTNNNNNAGG	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	630
EcoT14I	CCWWGG	3 cut(s)	97, 608, 659
ErhI	CCWWGG	3 cut(s)	97, 608, 659
FaeI	CATG	6 cut(s)	76, 359, 725, 792, 920, 949
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	6 cut(s)	72, 355, 721, 788, 916, 945
FbaI	TGATCA	3 cut(s)	84, 451, 1003
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	3 cut(s)	174, 267, 365
FokI	GGATG	4 cut(s)	55, 315, 815, 872
Fsp4HI	GCNGC	3 cut(s)	174, 267, 365
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	3 cut(s)	174, 267, 365
GsuI	CTGGAG	2 cut(s)	513, 1196
HaeIII	GGCC	3 cut(s)	8, 51, 376
HapII	CCGG	3 cut(s)	9, 206, 373
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	6 cut(s)	76, 359, 725, 792, 920, 949
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	3 cut(s)	105, 255, 1021
HpaII	CCGG	3 cut(s)	9, 206, 373
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188I	TCNGA	5 cut(s)	576, 627, 670, 766, 1149
Hpy188III	TCNNGA	4 cut(s)	88, 492, 941, 957
Hpy8I	GTNNAC	1 cut(s)	889
HpyAV	CCTTC	4 cut(s)	6, 573, 850, 895
HpyCH4IV	ACGT	1 cut(s)	883
HpyCH4V	TGCA	9 cut(s)	35, 120, 176, 341, 367, 518, 620, 980, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	373, 494, 545, 1091
HpyF3I	CTNAG	9 cut(s)	480, 573, 582, 624, 633, 741, 771, 1095, 1146
HpySE526I	ACGT	1 cut(s)	883
Hsp92II	CATG	6 cut(s)	76, 359, 725, 792, 920, 949
HspAI	GCGC	1 cut(s)	605
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Ksp22I	TGATCA	3 cut(s)	84, 451, 1003
Kzo9I	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	6 cut(s)	494, 508, 536, 661, 1034, 1177
Lsp1109I	GCAGC	3 cut(s)	160, 253, 351
LweI	GCATC	6 cut(s)	497, 548, 599, 650, 850, 1087
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	883
MalI	GATC	6 cut(s)	86, 453, 831, 914, 1005, 1058
MboI	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
MboII	GAAGA	7 cut(s)	217, 704, 834, 980, 1057, 1118, 1162
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	1 cut(s)	1056
MluCI	AATT	9 cut(s)	79, 229, 405, 688, 784, 796, 810, 845, 1194
MlyI	GAGTC	2 cut(s)	114, 1030
MroNI	GCCGGC	1 cut(s)	372
MseI	TTAA	3 cut(s)	348, 927, 1131
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	9, 206, 373
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	810
MwoI	GCNNNNNNNGC	4 cut(s)	373, 494, 545, 1091
NaeI	GCCGGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	6 cut(s)	76, 359, 725, 792, 920, 949
NlaIV	GGNNCC	2 cut(s)	7, 738
NmeAIII	GCCGAG	1 cut(s)	340
NspI	RCATGY	1 cut(s)	949
OliI	CACNNNNGTG	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	51
PciI	ACATGT	1 cut(s)	945
PciSI	GCTCTTC	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	175, 268, 366
PleI	GAGTC	2 cut(s)	113, 1029
PpsI	GAGTC	2 cut(s)	113, 1029
PscI	ACATGT	1 cut(s)	945
PspN4I	GGNNCC	2 cut(s)	7, 738
PspPI	GGNCC	2 cut(s)	6, 306
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	2 cut(s)	770, 1190
PsuI	RGATCY	1 cut(s)	1056
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	5 cut(s)	192, 511, 522, 570, 1169
RsaNI	GTAC	5 cut(s)	191, 510, 521, 569, 1168
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	348, 927, 1131
SatI	GCNGC	3 cut(s)	174, 267, 365
Sau3AI	GATC	6 cut(s)	84, 451, 829, 912, 1003, 1056
Sau96I	GGNCC	2 cut(s)	6, 306
ScaI	AGTACT	1 cut(s)	511
SchI	GAGTC	2 cut(s)	114, 1030
ScrFI	CCNGG	1 cut(s)	207
SfaNI	GCATC	6 cut(s)	497, 548, 599, 650, 850, 1087
SfcI	CTRYAG	4 cut(s)	516, 543, 594, 645
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	9 cut(s)	79, 229, 405, 688, 784, 796, 810, 845, 1194
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	3 cut(s)	97, 608, 659
TaiI	ACGT	1 cut(s)	886
TaqI	TCGA	1 cut(s)	135
TasI	AATT	9 cut(s)	79, 229, 405, 688, 784, 796, 810, 845, 1194
TatI	WGTACW	4 cut(s)	190, 509, 520, 1167
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	3 cut(s)	348, 927, 1131
Tru9I	TTAA	3 cut(s)	348, 927, 1131
TscAI	CASTG	5 cut(s)	241, 316, 374, 384, 690
TseI	GCWGC	3 cut(s)	173, 266, 364
TspDTI	ATGAA	5 cut(s)	153, 299, 422, 777, 948
TspGWI	ACGGA	2 cut(s)	267, 1151
TspRI	CASTG	5 cut(s)	241, 316, 374, 384, 690
VpaK11BI	GGWCC	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	45
XapI	RAATTY	3 cut(s)	79, 796, 1194
XceI	RCATGY	1 cut(s)	949
XmiI	GTMKAC	1 cut(s)	888
XspI	CTAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.