Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000666

Physical Location & Seq

Genomic Coordinates Reverse (-)

21192980 .. 21196145

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCATTCAAACATCCAAAAAAATGGAAAAGTCGTGGCAAGGTTGCTGAGGTTGAAACTGCTGAAGATGCTGAGAGTGAAGTGGCTCAAGTGGAGAAGGCTAGTCCTATGATTGAAGCCCTAGTTCCAAATAAGGGTGGAGTACCTCGACCTCTCTCTCCCCGGCGTCTCGCTTCCCTTAATTTTACCCCAGAGCTGTCAGATCTACTTGTTCTCGAATGCTCTGGTCTTCCCCCGAGAGTCCATGGACATCTGAACGCTGAAGAGAATGAATACGAAGAAGGTGTAGTGCCAGAGATGAAATTTGTGTTGACCAAGGAAGACGTAACAGAGACTGGAGCACCAGCTACTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGACCTGGCACCCTACCCTGTACAAGCAAGACAGTTGAGAAGTAATCACCTTGGTGGAGTTATATTTTGGTGCAAGAGCAGCACAATGATGGAGTGTTTATCTAAACAACTCTTTGGTTTACCGGTGAGAACACAATTTCCCGCACAGGTTCAAATTCGCATCCGGCTGCAGTGCAAACCACTGCTTGAAAGTCAATTTAAACCAATTATTGCAGACAACTACTACAGTGCAAATAAATTCTGGTTTGAGATTGATCATGCTGAGACAAACAAGCTGATGTCTTTGTTAGCATCTTGCGCGGTTGTGCAATCTCTCCAGGTACTTCTGTACCGCAGAAAATACCAAAGAGGAAAACTGATCTTCCAACGCAACCCTCATGTAAGACAACAGTGGCAGCTTAGTGGCTTAAACCATCACTTCAGGGGCGAAAACACTAGTTGGAAACTACAATCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0008150 GO:0008582 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044424 GO:0044464 GO:0045886 GO:0045926 GO:0048519 GO:0048523 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0051963 GO:0051964 GO:0065007 GO:0065008 GO:1904396 GO:1904397 GO:1905809 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death Kelch_1 Kelch_5

Protein Analysis

307

Amino Acids

35.13

Weight (kDa)

8.82

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	198 - 250	7.1e-17	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01660 AT5G01660 AT5G01660
fragaria_vesca	FvH4_6g10590 FvH4_6g10591 FvH4_6g10591 FvH4_6g10591
malus_domestica	MD04G1166900.v1.1 MD12G1180200.v1.1 MD12G1180500.v1.1
prunus_persica	Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285100_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1 Prupe.6G285200_v2.0.a1
pyrus_communis	pycom04g14830 pycom12g16990
rosa_chinensis	RchiOBHm_Chr2g0145311 RchiOBHm_Chr3g0461571 RchiOBHm_Chr3g0461581
rosa_laevigata	RLG00000024916 RLG00000024917
rosa_multiflora	Rmu_sc0000790.1_g000001 Rmu_sc0003979.1_g000002 Rmu_sc0006964.1_g000002 Rmu_sc0010327.1_g000003 Rmu_ssc0000193.1_g000005 Rmu_ssc0000193.1_g000006
rosa_roxburghii	Rroxscaffold_4G00330190 Rroxscaffold_6G00418120 Rroxscaffold_6G00418130 Rroxscaffold_6G00418490 Rroxscaffold_6G00418500
rosa_rugosa	Rorug01G0017200 Rorug01G0017900 Rorug03G0051900 Rorug03G0052000 Rorug03G0052000 Rorug03G0052100
rosa_samantha	Rh1CG027200 Rh1CG027400 Rh1CG027500 Rh1CG027700 Rh1CG073300 Rh1CG101500 Rh1CG101600 Rh1DG042300 Rh1DG042800 Rh3AG110200 Rh3AG110300 Rh3BG113400 Rh3BG113500 Rh3CG115300 Rh3CG115400 Rh3DG115100 Rh3DG115200 Rh5AG167800 Rh5BG556300 Rh5CG579000 Rh6AG136600 Rh7DG359300
rosa_wichuraiana	Rw1G002200 Rw1G002230 Rw3G009320 Rw3G009330 Rw7G020340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	472
AccII	CGCG	1 cut(s)	764
AciI	CCGC	4 cut(s)	408, 606, 764, 796
AcsI	RAATTY	3 cut(s)	302, 618, 701
AcuI	CTGAAG	3 cut(s)	84, 282, 868
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	4 cut(s)	144, 486, 786, 794
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	7 cut(s)	10, 56, 116, 364, 458, 617, 653
AhlI	ACTAGT	1 cut(s)	899
AjnI	CCWGG	3 cut(s)	383, 468, 780
AleI	CACNNNNGTG	1 cut(s)	516
AloI	GAACNNNNNNTCC	4 cut(s)	383, 415, 586, 618
AluBI	AGCT	4 cut(s)	196, 347, 739, 862
AluI	AGCT	4 cut(s)	196, 347, 739, 862
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	4 cut(s)	173, 326, 433, 722
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	235
ApeKI	GCWGC	3 cut(s)	543, 631, 859
ApoI	RAATTY	3 cut(s)	302, 618, 701
AsiGI	ACCGGT	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	764
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	503, 601
AvaI	CYCGRG	1 cut(s)	235
BaeI	ACNNNNGTAYC	4 cut(s)	776, 776, 809, 809
BanI	GGYRCC	1 cut(s)	472
BbsI	GAAGAC	2 cut(s)	221, 327
Bbv12I	GWGCWC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	555, 618, 871
BccI	CCATC	3 cut(s)	424, 547, 885
BciT130I	CCWGG	3 cut(s)	385, 470, 782
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	4 cut(s)	173, 326, 433, 722
BcuI	ACTAGT	1 cut(s)	899
BfaI	CTAG	3 cut(s)	102, 122, 900
BfmI	CTRYAG	2 cut(s)	632, 688
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	4 cut(s)	409, 544, 632, 860
BlsI	GCNGC	4 cut(s)	410, 545, 633, 861
Bme1390I	CCNGG	4 cut(s)	163, 385, 470, 782
BmeT110I	CYCGRG	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	4 cut(s)	163, 385, 470, 782
BmsI	GCATC	3 cut(s)	58, 633, 764
BpiI	GAAGAC	2 cut(s)	221, 327
BpmI	CTGGAG	2 cut(s)	357, 764
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	5 cut(s)	161, 244, 315, 384, 514
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	3 cut(s)	385, 470, 782
BseDI	CCNNGG	5 cut(s)	161, 244, 315, 384, 514
BseGI	GGATG	2 cut(s)	13, 624
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	3 cut(s)	39, 63, 717
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	555, 618, 871
Bsh1236I	CGCG	1 cut(s)	764
BshNI	GGYRCC	1 cut(s)	472
BshTI	ACCGGT	1 cut(s)	586
BsiHKAI	GWGCWC	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	163, 587, 628
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	4 cut(s)	173, 326, 433, 722
BsmBI	CGTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	202, 718, 822
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	4 cut(s)	408, 606, 764, 796
BspCNI	CTCAG	3 cut(s)	40, 64, 718
BspFNI	CGCG	1 cut(s)	764
BspLI	GGNNCC	1 cut(s)	474
BspMAI	CTGCAG	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	5 cut(s)	161, 244, 315, 384, 514
BssMI	GATC	3 cut(s)	202, 718, 822
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	3 cut(s)	244, 315, 514
Bst2UI	CCWGG	3 cut(s)	385, 470, 782
Bst4CI	ACNGT	3 cut(s)	498, 692, 855
Bst6I	CTCTTC	2 cut(s)	258, 453
BstACI	GRCGYC	1 cut(s)	166
BstAUI	TGTACA	1 cut(s)	484
BstDEI	CTNAG	4 cut(s)	48, 72, 726, 863
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	13, 624
BstFNI	CGCG	1 cut(s)	764
BstHHI	GCGC	1 cut(s)	764
BstKTI	GATC	3 cut(s)	205, 721, 825
BstMAI	GTCTC	4 cut(s)	173, 326, 433, 722
BstMBI	GATC	3 cut(s)	202, 718, 822
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 543, 761
BstNI	CCWGG	3 cut(s)	385, 470, 782
BstSCI	CCNGG	4 cut(s)	161, 383, 468, 780
BstSFI	CTRYAG	2 cut(s)	632, 688
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	3 cut(s)	555, 618, 871
BstV2I	GAAGAC	2 cut(s)	221, 327
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	13, 624
BtsI	GCAGTG	2 cut(s)	641, 644
BtsIMutI	CAGTG	4 cut(s)	641, 644, 697, 860
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	764
Cfr10I	RCCGGY	1 cut(s)	586
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	4 cut(s)	143, 485, 785, 793
CspAI	ACCGGT	1 cut(s)	586
CviAII	CATG	4 cut(s)	245, 394, 722, 842
CviQI	GTAC	4 cut(s)	143, 485, 785, 793
DdeI	CTNAG	4 cut(s)	48, 72, 726, 863
DpnI	GATC	3 cut(s)	204, 720, 824
DpnII	GATC	3 cut(s)	202, 718, 822
DraI	TTTAAA	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	258, 453
EarI	CTCTTC	2 cut(s)	258, 453
Eco130I	CCWWGG	3 cut(s)	244, 315, 514
Eco57I	CTGAAG	3 cut(s)	84, 282, 868
Eco88I	CYCGRG	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	383, 468, 780
EcoT14I	CCWWGG	3 cut(s)	244, 315, 514
ErhI	CCWWGG	3 cut(s)	244, 315, 514
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	248, 397, 725, 845
FaiI	YATR	7 cut(s)	110, 246, 395, 413, 527, 723, 843
FatI	CATG	4 cut(s)	244, 393, 721, 841
FauI	CCCGC	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	4 cut(s)	409, 544, 632, 860
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	4 cut(s)	409, 544, 632, 860
FspBI	CTAG	3 cut(s)	102, 122, 900
GlaI	GCGC	1 cut(s)	763
GluI	GCNGC	4 cut(s)	409, 544, 632, 860
GsuI	CTGGAG	2 cut(s)	357, 764
HapII	CCGG	3 cut(s)	163, 587, 628
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	764
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	4 cut(s)	248, 397, 725, 845
Hin6I	GCGC	1 cut(s)	762
HinP1I	GCGC	1 cut(s)	762
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	240, 398
HpaII	CCGG	3 cut(s)	163, 587, 628
HphI	GGTGA	2 cut(s)	503, 601
Hpy166II	GTNNAC	2 cut(s)	312, 584
Hpy188I	TCNGA	2 cut(s)	202, 255
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	312, 584
HpyAV	CCTTC	2 cut(s)	91, 275
HpyCH4III	ACNGT	3 cut(s)	498, 692, 855
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	6 cut(s)	537, 634, 639, 677, 695, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 543, 761
HpyF3I	CTNAG	4 cut(s)	48, 72, 726, 863
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	248, 397, 725, 845
HspAI	GCGC	1 cut(s)	762
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	3 cut(s)	202, 718, 822
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	3 cut(s)	555, 618, 871
LweI	GCATC	3 cut(s)	58, 633, 764
MaeI	CTAG	3 cut(s)	102, 122, 900
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	204, 720, 824
MboI	GATC	3 cut(s)	202, 718, 822
MboII	GAAGA	7 cut(s)	77, 221, 275, 290, 332, 470, 817
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	8 cut(s)	181, 302, 453, 599, 618, 659, 669, 701
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	853, 884
MnlI	CCTC	6 cut(s)	43, 156, 162, 441, 806, 849
MseI	TTAA	4 cut(s)	180, 452, 663, 872
MslI	CAYNNNNRTG	2 cut(s)	516, 551
MspI	CCGG	3 cut(s)	163, 587, 628
MspR9I	CCNGG	4 cut(s)	163, 385, 470, 782
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	3 cut(s)	385, 470, 782
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	3 cut(s)	68, 543, 761
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	202, 718, 822
NlaIII	CATG	4 cut(s)	248, 397, 725, 845
NlaIV	GGNNCC	1 cut(s)	474
OliI	CACNNNNGTG	1 cut(s)	516
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	398
PinAI	ACCGGT	1 cut(s)	586
PkrI	GCNGC	4 cut(s)	410, 545, 633, 861
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	3 cut(s)	383, 468, 780
PspGI	CCWGG	3 cut(s)	383, 468, 780
PspN4I	GGNNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	636
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	4 cut(s)	144, 486, 786, 794
RsaNI	GTAC	4 cut(s)	143, 485, 785, 793
RseI	CAYNNNNRTG	2 cut(s)	516, 551
SaqAI	TTAA	4 cut(s)	180, 452, 663, 872
SatI	GCNGC	4 cut(s)	409, 544, 632, 860
Sau3AI	GATC	3 cut(s)	202, 718, 822
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	4 cut(s)	163, 385, 470, 782
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	3 cut(s)	58, 633, 764
SfcI	CTRYAG	2 cut(s)	632, 688
SmiMI	CAYNNNNRTG	2 cut(s)	516, 551
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SpeI	ACTAGT	1 cut(s)	899
Sse9I	AATT	8 cut(s)	181, 302, 453, 599, 618, 659, 669, 701
SsiI	CCGC	4 cut(s)	408, 606, 764, 796
SspMI	CTAG	3 cut(s)	102, 122, 900
StyD4I	CCNGG	4 cut(s)	161, 383, 468, 780
StyI	CCWWGG	3 cut(s)	244, 315, 514
TaaI	ACNGT	3 cut(s)	498, 692, 855
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	148, 216
TasI	AATT	8 cut(s)	181, 302, 453, 599, 618, 659, 669, 701
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	4 cut(s)	180, 452, 663, 872
Tru9I	TTAA	4 cut(s)	180, 452, 663, 872
TscAI	CASTG	4 cut(s)	641, 651, 697, 860
TseI	GCWGC	3 cut(s)	543, 631, 859
TspDTI	ATGAA	3 cut(s)	285, 314, 384
TspRI	CASTG	4 cut(s)	641, 651, 697, 860
XapI	RAATTY	3 cut(s)	302, 618, 701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XspI	CTAG	3 cut(s)	102, 122, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.