Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001162

Physical Location & Seq

Genomic Coordinates Forward (+)

2793374 .. 2794551

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1040700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCGTGGCGCGGTTACTCTCAAGGTGCACTTAAGGGAACCATATGCATGGGGTGGAGTTCTTGTGGCACCAATGTGTAAAATTGCAGAGGACGTAACACCTCCAGCGGCCGAGCTGAAGATATTAACTCTCATGTCAAAAGTTATGCGGAAAGAAAAGCTTGTCCCACAGAATGAATTAGTGGAGCTGGCCTTCAGAGACCTTCGAAAAGGGGAAATGGTGATTGATCCCCTGGTGAGCCAGTTTCTCTATGAGAAGGCCTCTAGCAAGGATAAAACCCTAAAACTCTACCCGGAAGGTTATCATTCCATTCTCGAAGGAGAACCAGATAACACCATTTTTACCGTCCTTGACGATATTATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

123

Amino Acids

13.74

Weight (kDa)

5.7

Isoelectric Point (pI)

24.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	73 - 109	1e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77420
fragaria_vesca	FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270
malus_domestica	MD13G1040700.v1.1 MD16G1041900.v1.1 MD16G1042000.v1.1
prunus_persica	Prupe.1G312100_v2.0.a1 Prupe.1G312100_v2.0.a1 Prupe.1G312100_v2.0.a1 Prupe.1G312100_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1
pyrus_communis	pycom16g03620 pycom16g03630
rosa_chinensis	RchiOBHm_Chr4g0435041 RchiOBHm_Chr4g0435051
rosa_laevigata	RLG00000001398 RLG00000006624 RLG00000006625
rosa_multiflora	Rmu_co8262875.1_g000001 Rmu_sc0003633.1_g000014
rosa_roxburghii	Rroxscaffold_5G00376250 Rroxscaffold_5G00376260
rosa_rugosa	Rorug03G0122900 Rorug04G0282000 Rorug04G0282000 Rorug04G0282100
rosa_samantha	Rh4AG337400 Rh4AG337500 Rh4BG345400 Rh4BG345500 Rh4CG360100 Rh4CG360200 Rh4DG339900 Rh4DG340000 Rh5DG504500 Rh6AG077600 Rh6AG315900
rosa_wichuraiana	Rw4G029420 Rw4G029430 Rw6G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccII	CGCG	1 cut(s)	11
AciI	CCGC	3 cut(s)	11, 107, 148
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	108
AcuI	CTGAAG	2 cut(s)	137, 178
AflII	CTTAAG	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	231
AleI	CACNNNNGTG	1 cut(s)	73
AluBI	AGCT	3 cut(s)	115, 160, 187
AluI	AGCT	3 cut(s)	115, 160, 187
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	3 cut(s)	108, 189, 258
ApaLI	GTGCAC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	232, 247
AsuII	TTCGAA	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	31
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	233, 293
BmiI	GGNNCC	2 cut(s)	39, 69
BmrFI	CCNGG	2 cut(s)	233, 293
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	30
BseX3I	CGGCCG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	110, 191, 260
BshNI	GGYRCC	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	110, 191, 260
Bso31I	GGTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	3 cut(s)	11, 107, 148
BspANI	GGCC	3 cut(s)	110, 191, 260
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	39, 69
BspPI	GGATC	1 cut(s)	221
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	67
BspTI	CTTAAG	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	346
BstAFI	CTTAAG	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	226
BstMCI	CGRYCG	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	231, 291
BstSLI	GKGCMC	1 cut(s)	30
BstUI	CGCG	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	110, 191, 260
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	11
CviAII	CATG	2 cut(s)	48, 133
CviJI	RGCY	7 cut(s)	110, 115, 160, 187, 191, 240, 260
CviKI_1	RGCY	7 cut(s)	110, 115, 160, 187, 191, 240, 260
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
EclXI	CGGCCG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	192
Eco52I	CGGCCG	1 cut(s)	108
Eco57I	CTGAAG	2 cut(s)	137, 178
EcoRII	CCWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	2 cut(s)	51, 136
FaiI	YATR	6 cut(s)	43, 45, 49, 134, 146, 252
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 144, 176
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	47, 132
FauNDI	CATATG	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	110, 191, 260
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	51, 136
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	158
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	232, 247
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	314, 366
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	5 cut(s)	202, 212, 250, 290, 311
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	28, 47, 86
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	51, 136
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	7 cut(s)	117, 173, 218, 245, 254, 306, 339
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	13, 94
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	81, 176
MnlI	CCTC	3 cut(s)	82, 111, 271
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	2 cut(s)	32, 125
MslI	CAYNNNNRTG	2 cut(s)	46, 73
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	31
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	233, 293
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	11
NciI	CCSGG	1 cut(s)	293
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	51, 136
NlaIV	GGNNCC	2 cut(s)	39, 69
NmeAIII	GCCGAG	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	39, 69
RseI	CAYNNNNRTG	2 cut(s)	46, 73
SaqAI	TTAA	2 cut(s)	32, 125
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	233, 293
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	27, 96, 103, 117, 162, 189, 204, 301
SfuI	TTCGAA	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	46, 73
SmlI	CTYRAG	2 cut(s)	20, 31
SmoI	CTYRAG	2 cut(s)	20, 31
Sse9I	AATT	2 cut(s)	81, 176
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	3 cut(s)	11, 107, 148
SspMI	CTAG	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	231, 291
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	205, 315
TasI	AATT	2 cut(s)	81, 176
TauI	GCSGC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	32, 125
Tru9I	TTAA	2 cut(s)	32, 125
TspDTI	ATGAA	1 cut(s)	189
Vha464I	CTTAAG	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	26
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.