Rh6AG315900

Caffeoylshikimate esterase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
51461190 .. 51463951
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG315900.1

Sequence Viewer

Length: 438 bp
ATGTCGGTGATATTTATTCAGATGGATCATGCTGGCATCAGAACAGAGGAGTGGTATGGAAGGAATTCAAGGGGTATGGAAATTTTCTGCAAAAGCTGGTTGCCAAAACCAGGTGATCAAATCAAAGCTGGCTTATGTTTCTGCCATGGGTATGGTAGTACTTGCACATTCTTCTTTGAAGGTATTGCTAGGAGAATTGCTCAGTCTGGGTACGCTGTGTATGCAGTAGACTATCCAGGTTTTGGTCTTTCTGAAGGGTTGCATGGTTTCATCCCAAACTTTGATGAGTTGGTCGATGATGTTATTGAACAATTTACTAGTATCAAAGGAATATCTGAAGTGAAAGGTTCGAGTGCAAGATATTCGGAGGCTTCCCCTATTCAGCTTGTGGAACTCCTGGAAGCTGAATGCATATATCTGCAATCTAGTATGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.17

Weight (kDa)

4.79

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 40 - 109 6.4e-17 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AccI GTMKAC 1 cut(s) 228
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 2 cut(s) 64, 81
AcuI CTGAAG 2 cut(s) 273, 357
AfaI GTAC 2 cut(s) 160, 212
AfiI CCNNNNNNNGG 2 cut(s) 110, 242
AgsI TTSAA 3 cut(s) 69, 179, 308
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 3 cut(s) 109, 235, 396
AluBI AGCT 4 cut(s) 96, 128, 385, 404
AluI AGCT 4 cut(s) 96, 128, 385, 404
AlwI GGATC 1 cut(s) 33
ApoI RAATTY 2 cut(s) 64, 81
Asp700I GAANNNNTTC 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 19, 125
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 3 cut(s) 111, 237, 398
BclI TGATCA 1 cut(s) 115
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 3 cut(s) 189, 318, 426
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 3 cut(s) 111, 237, 398
BmrFI CCNGG 3 cut(s) 111, 237, 398
BmsI GCATC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 184, 216
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 242
BseBI CCWGG 3 cut(s) 111, 237, 398
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 110, 242
BseMII CTCAG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 110, 242
BsmI GAATGC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 25, 115
Bsp19I CCATGG 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 25, 115
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 3 cut(s) 111, 237, 398
BstC8I GCNNGC 2 cut(s) 34, 130
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 2 cut(s) 28, 118
BstMBI GATC 2 cut(s) 25, 115
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 3 cut(s) 111, 237, 398
BstSCI CCNGG 3 cut(s) 109, 235, 396
BstXI CCANNNNNNTGG 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 34, 130
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 2 cut(s) 159, 211
CviAII CATG 3 cut(s) 29, 146, 263
CviJI RGCY 6 cut(s) 96, 128, 132, 371, 385, 404
CviKI_1 RGCY 6 cut(s) 96, 128, 132, 371, 385, 404
CviQI GTAC 2 cut(s) 159, 211
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 27, 117
DpnII GATC 2 cut(s) 25, 115
Eco130I CCWWGG 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 273, 357
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 109, 235, 396
EcoT14I CCWWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 32, 149, 266
FatI CATG 3 cut(s) 28, 145, 262
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 228
FokI GGATG 1 cut(s) 257
FspBI CTAG 3 cut(s) 189, 318, 426
Hin1II CATG 3 cut(s) 32, 149, 266
HphI GGTGA 2 cut(s) 19, 125
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 5 cut(s) 21, 41, 253, 337, 367
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 54, 173, 248
HpyCH4V TGCA 7 cut(s) 90, 165, 224, 262, 356, 411, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 3 cut(s) 32, 149, 266
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 25, 115
LweI GCATC 1 cut(s) 45
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 3 cut(s) 189, 318, 426
MalI GATC 2 cut(s) 27, 117
MboI GATC 2 cut(s) 25, 115
MboII GAAGA 1 cut(s) 163
MluCI AATT 4 cut(s) 64, 81, 195, 311
MnlI CCTC 2 cut(s) 40, 361
Mph1103I ATGCAT 1 cut(s) 413
MroXI GAANNNNTTC 1 cut(s) 64
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 111, 237, 398
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 3 cut(s) 111, 237, 398
MwoI GCNNNNNNNGC 1 cut(s) 221
NcoI CCATGG 1 cut(s) 145
NdeII GATC 2 cut(s) 25, 115
NlaIII CATG 3 cut(s) 32, 149, 266
NsiI ATGCAT 1 cut(s) 413
PctI GAATGC 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 396
Psp6I CCWGG 3 cut(s) 109, 235, 396
PspGI CCWGG 3 cut(s) 109, 235, 396
RsaI GTAC 2 cut(s) 160, 212
RsaNI GTAC 2 cut(s) 159, 211
RseI CAYNNNNRTG 1 cut(s) 150
Sau3AI GATC 2 cut(s) 25, 115
ScaI AGTACT 1 cut(s) 160
ScrFI CCNGG 3 cut(s) 111, 237, 398
SetI ASST 8 cut(s) 98, 115, 130, 184, 241, 349, 387, 406
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 150
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 4 cut(s) 64, 81, 195, 311
SspMI CTAG 3 cut(s) 189, 318, 426
StyD4I CCNGG 3 cut(s) 109, 235, 396
StyI CCWWGG 1 cut(s) 145
TaqI TCGA 2 cut(s) 294, 350
TasI AATT 4 cut(s) 64, 81, 195, 311
TatI WGTACW 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 242
XapI RAATTY 2 cut(s) 64, 81
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 3 cut(s) 189, 318, 426
ZrmI AGTACT 1 cut(s) 160
Zsp2I ATGCAT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.