Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001162

Physical Location & Seq

Genomic Coordinates Forward (+)

56239722 .. 56241870

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAACCTTTCCCTGAGTTTCCGATCACCAGAGGCGTCTCTGTTTCACCGGAGATATAGCTCTCCGAACAAACACCTGCAAAAACAGCAAGTACCCAATTTACTCTCGTTCCCCAAACTACAATTTCCAGTGCCCAAAACTCAGTTCAGGGTCACGGCTCGGAAAGGGTCAGCTATAGAAGGCTTAAGCCAAGAGATGAACACCATCGCCTCGCAGAACCTGGATCACGCGCCTGCTCGGAGACGAGTTCGCTCGGCATTCATCGACGTGCATAAACAACTTGACCATTGCTTGTTCAAGATGGATCATGCTGGCATCAGAACAGAGGAGTGGTATGGAAGGAATTCAAGGGGTATGGAAATTTTCTGCAAAAGCTGGTTGCCGAAACCGGGTGATCAAGTCAAAGCTAGCTTATGTTTTTGCCATGGGTACGGTAGTACTTGCACATTCTTCTTTGAAGGTATTGCTAGGAGAATTGCTCAGTCTGGGTACGCTGTATATGCAGTAGACTATCCAGGTTTTGGTCTTTCTGAAGGGTTGCATGGTTTCATCCCAGACTTTGATGAGTTGGTCGATGATGTTATTGAACAATTTACTAGTATCAAAGGAAGATCTGAAGTGAAAGGTTTGCCCTTTTTTATAATGGGGGAGTCGATGGGTGGAGCTGTCACCCTAAAGATTCATCTAAAGGAACCGCATGAATGGGATGGAGTGATCCTTGTATCTCCAATGTGTAAAATTGCAGATGATGTGATGCCTCCAGCAATAGTGCTGAAGCTATTAGCCTTCATGTCTGAAGTTTTGCCCGAGGCAAAACTCTTCCCACAGAAAGATATAGCTCATCTAAGCTACAGAGAGCTCGGAAAGAGAAAAACGACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

294

Amino Acids

33.22

Weight (kDa)

8.95

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	133 - 282	8.3e-38	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	138 - 261	9e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	140 - 265	2.4e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77420
fragaria_vesca	FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27260 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270 FvH4_4g27270
malus_domestica	MD13G1040700.v1.1 MD16G1041900.v1.1 MD16G1042000.v1.1
prunus_persica	Prupe.1G312100_v2.0.a1 Prupe.1G312100_v2.0.a1 Prupe.1G312100_v2.0.a1 Prupe.1G312100_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1 Prupe.1G312200_v2.0.a1
pyrus_communis	pycom16g03620 pycom16g03630
rosa_chinensis	RchiOBHm_Chr4g0435041 RchiOBHm_Chr4g0435051
rosa_laevigata	RLG00000001398 RLG00000006624 RLG00000006625
rosa_multiflora	Rmu_co8262875.1_g000001 Rmu_sc0003633.1_g000014
rosa_roxburghii	Rroxscaffold_5G00376250 Rroxscaffold_5G00376260
rosa_rugosa	Rorug03G0122900 Rorug04G0282000 Rorug04G0282000 Rorug04G0282100
rosa_samantha	Rh4AG337400 Rh4AG337500 Rh4BG345400 Rh4BG345500 Rh4CG360100 Rh4CG360200 Rh4DG339900 Rh4DG340000 Rh5DG504500 Rh6AG077600 Rh6AG315900
rosa_wichuraiana	Rw4G029420 Rw4G029430 Rw6G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	641
AarI	CACCTGC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	230
AciI	CCGC	1 cut(s)	695
AclWI	GGATC	3 cut(s)	231, 312, 709
AcsI	RAATTY	2 cut(s)	343, 360
AcuI	CTGAAG	4 cut(s)	552, 636, 794, 816
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	4 cut(s)	93, 431, 439, 491
AfiI	CCNNNNNNNGG	2 cut(s)	389, 521
AflII	CTTAAG	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	298, 348, 458, 587
AhlI	ACTAGT	1 cut(s)	596
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	219, 514
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	42, 235
AlwI	GGATC	3 cut(s)	231, 312, 709
AlwNI	CAGNNNCTG	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	806
ApoI	RAATTY	2 cut(s)	343, 360
Asp700I	GAANNNNTTC	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	18, 38, 404, 661
AsuNHI	GCTAGC	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	135
BaeI	ACNNNNGTAYC	2 cut(s)	421, 454
BanII	GRGCYC	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	861
BccI	CCATC	4 cut(s)	212, 295, 649, 701
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	221, 516
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	42, 235
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	3 cut(s)	408, 468, 597
BfmI	CTRYAG	2 cut(s)	174, 850
BfrI	CTTAAG	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	84
BglII	AGATCT	1 cut(s)	611
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	221, 390, 516
BmeT110I	CYCGRG	1 cut(s)	806
BmgBI	CACGTC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	693
BmrFI	CCNGG	3 cut(s)	221, 390, 516
BmsI	GCATC	2 cut(s)	324, 744
BmtI	GCTAGC	1 cut(s)	411
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	1 cut(s)	744
BpuMI	CCSGG	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	424, 807
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 521
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	221, 516
BseDI	CCNNGG	2 cut(s)	424, 807
BseGI	GGATG	2 cut(s)	549, 712
BseLI	CCNNNNNNNGG	2 cut(s)	389, 521
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	3 cut(s)	5, 155, 494
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	861
BsiHKCI	CYCGRG	1 cut(s)	806
BsiSI	CCGG	2 cut(s)	49, 389
BslI	CCNNNNNNNGG	2 cut(s)	389, 521
BsmAI	GTCTC	2 cut(s)	42, 235
BsmBI	CGTCTC	2 cut(s)	42, 235
BsmI	GAATGC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	806
Bsp1286I	GDGCHC	2 cut(s)	135, 861
Bsp143I	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	695
BspCNI	CTCAG	3 cut(s)	6, 154, 493
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	693
BspMI	ACCTGC	1 cut(s)	84
BspOI	GCTAGC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	231, 312, 709
BspTI	CTTAAG	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	424, 807
BssMI	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	221, 516
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	824
BstACI	GRCGYC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	234, 313, 409
BstDEI	CTNAG	4 cut(s)	14, 141, 480, 845
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	549, 712
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	6 cut(s)	26, 226, 307, 397, 614, 717
BstMAI	GTCTC	2 cut(s)	42, 235
BstMBI	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 500
BstNI	CCWGG	2 cut(s)	221, 516
BstSCI	CCNGG	3 cut(s)	219, 388, 514
BstSFI	CTRYAG	2 cut(s)	174, 850
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	424
BtgZI	GCGATG	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	549, 712
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	234, 313, 409
CaiI	CAGNNNCTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	232
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	4 cut(s)	92, 430, 438, 490
CviAII	CATG	5 cut(s)	308, 425, 542, 698, 790
CviQI	GTAC	4 cut(s)	92, 430, 438, 490
DdeI	CTNAG	4 cut(s)	14, 141, 480, 845
DpnI	GATC	6 cut(s)	25, 225, 306, 396, 613, 716
DpnII	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Ecl136II	GAGCTC	1 cut(s)	859
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	861
Eco53kI	GAGCTC	1 cut(s)	859
Eco57I	CTGAAG	4 cut(s)	552, 636, 794, 816
Eco88I	CYCGRG	1 cut(s)	806
EcoICRI	GAGCTC	1 cut(s)	859
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	219, 514
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	861
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	2 cut(s)	42, 235
FaeI	CATG	5 cut(s)	311, 428, 545, 701, 793
FatI	CATG	5 cut(s)	307, 424, 541, 697, 789
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	507
FokI	GGATG	2 cut(s)	536, 719
FriOI	GRGCYC	1 cut(s)	861
FspBI	CTAG	3 cut(s)	408, 468, 597
GlaI	GCGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	744
HapII	CCGG	2 cut(s)	49, 389
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	5 cut(s)	311, 428, 545, 701, 793
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	3 cut(s)	650, 679, 877
HpaII	CCGG	2 cut(s)	49, 389
HphI	GGTGA	4 cut(s)	18, 38, 404, 661
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	9 cut(s)	23, 66, 162, 240, 320, 532, 616, 796, 863
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	5 cut(s)	173, 333, 452, 527, 796
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	7 cut(s)	79, 271, 369, 444, 503, 541, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 500
HpyF3I	CTNAG	4 cut(s)	14, 141, 480, 845
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	311, 428, 545, 701, 793
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
LmnI	GCTCC	1 cut(s)	662
LweI	GCATC	2 cut(s)	324, 744
MaeI	CTAG	3 cut(s)	408, 468, 597
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	151, 667
MalI	GATC	6 cut(s)	25, 225, 306, 396, 613, 716
MboI	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
MboII	GAAGA	3 cut(s)	442, 621, 811
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	135, 861
MluCI	AATT	7 cut(s)	97, 122, 343, 360, 474, 590, 738
MlyI	GAGTC	2 cut(s)	659, 871
MnlI	CCTC	5 cut(s)	25, 220, 319, 768, 802
MroXI	GAANNNNTTC	1 cut(s)	343
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	184
MspI	CCGG	2 cut(s)	49, 389
MspR9I	CCNGG	3 cut(s)	221, 390, 516
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	2 cut(s)	221, 516
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	85, 500
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
NheI	GCTAGC	1 cut(s)	407
NlaIII	CATG	5 cut(s)	311, 428, 545, 701, 793
NlaIV	GGNNCC	1 cut(s)	693
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	2 cut(s)	151, 667
PaqCI	CACCTGC	1 cut(s)	84
PctI	GAATGC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	679
PflMI	CCANNNNNTGG	1 cut(s)	521
PleI	GAGTC	2 cut(s)	658, 871
PpsI	GAGTC	2 cut(s)	658, 871
PsiI	TTATAA	1 cut(s)	641
Psp124BI	GAGCTC	1 cut(s)	861
Psp6I	CCWGG	2 cut(s)	219, 514
PspGI	CCWGG	2 cut(s)	219, 514
PspN4I	GGNNCC	1 cut(s)	693
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	4 cut(s)	93, 431, 439, 491
RsaNI	GTAC	4 cut(s)	92, 430, 438, 490
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	861
SaqAI	TTAA	1 cut(s)	185
Sau3AI	GATC	6 cut(s)	23, 223, 304, 394, 611, 714
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	2 cut(s)	659, 871
ScrFI	CCNGG	3 cut(s)	221, 390, 516
SduI	GDGCHC	2 cut(s)	135, 861
SfaNI	GCATC	2 cut(s)	324, 744
SfcI	CTRYAG	2 cut(s)	174, 850
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	7 cut(s)	97, 122, 343, 360, 474, 590, 738
SsiI	CCGC	1 cut(s)	695
SspMI	CTAG	3 cut(s)	408, 468, 597
SstI	GAGCTC	1 cut(s)	861
StyD4I	CCNGG	3 cut(s)	219, 388, 514
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	264, 573, 653
TasI	AATT	7 cut(s)	97, 122, 343, 360, 474, 590, 738
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	151, 667
Tsp45I	GTSAC	2 cut(s)	151, 667
TspDTI	ATGAA	7 cut(s)	17, 212, 250, 538, 671, 714, 778
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	521
Vha464I	CTTAAG	1 cut(s)	184
XapI	RAATTY	2 cut(s)	343, 360
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	3 cut(s)	408, 468, 597
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.