Rh5DG504500

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001162
Physical Location & Seq
Reverse (-)
78884635 .. 78890521
5887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG504500.1

Sequence Viewer

Length: 645 bp
ATGTTCTCCTCATTGTCCCTGTTCCACGTATGTACCCTCTTCCACTACTTCATCATTTTTACTAATTGTTCGGTTGACTTGTTTCCTAGTGATGTCACTACAGGTTCTTCCATTGATGTCCCTATCGCTGGTCATGCTGATTTTATTGCCCCGCCTCAAGGTTTTGCTTCATCTGGTGATCCTCACATTGCCTCTGACACTTCTTTGGCTTCTTCTTCTACTGATTCATCTATTAATGATTCTTCTGAGTCATCTGCTGATGATTCTTCTTGTTCCTCCTCTTCTAAGGATCATTCACCTCCTCATTGTTCTACTTGGATGGTTCATGCTGGCATCAGAACAGAGGAGTGGTATGGAAGGAATTCAAGGGGTATGGAAATTTTCTGCAAAAGCTGGTTGCCAAAACCAGGTGATCAAATCCAAGCTGGCTTATGTTTCTGCCATGGGTACGGTAGTACTTGCACATTCTTCTTTGAAGGTATTGCTAGGAGAATTGCTCAGTCTGGGTACGCTGTGTATGCAGTAGACTATCCAGGTTTTGGTATTTCAGAAGGGTTGCATGGTTTCATCCCAGACTTTGATGAGTTGGTCGATGATGTTACTGAACAATTTACTAGTATCAAAGGTGTGAAATTGATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

214

Amino Acids

23.09

Weight (kDa)

4.66

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 140 - 208 8.2e-16 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 539
AccI GTMKAC 1 cut(s) 525
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 173, 297
AcsI RAATTY 2 cut(s) 361, 378
AfaI GTAC 4 cut(s) 34, 449, 457, 509
AfiI CCNNNNNNNGG 4 cut(s) 128, 158, 407, 539
AgsI TTSAA 2 cut(s) 366, 476
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 2 cut(s) 406, 532
AluBI AGCT 2 cut(s) 393, 425
AluI AGCT 2 cut(s) 393, 425
AlwI GGATC 2 cut(s) 173, 297
ApoI RAATTY 2 cut(s) 361, 378
AseI ATTAAT 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 188, 288, 422
BaeI ACNNNNGTAYC 4 cut(s) 16, 49, 439, 472
BccI CCATC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 408, 534
BclI TGATCA 1 cut(s) 412
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 3 cut(s) 87, 486, 615
BfmI CTRYAG 1 cut(s) 99
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 408, 534
BmrFI CCNGG 2 cut(s) 408, 534
BmsI GCATC 1 cut(s) 342
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpuEI CTTGAG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 442
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 158, 407, 539
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 2 cut(s) 408, 534
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 2 cut(s) 324, 567
BseLI CCNNNNNNNGG 4 cut(s) 128, 158, 407, 539
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 237, 512
BseRI GAGGAG 3 cut(s) 268, 291, 359
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 4 cut(s) 128, 158, 407, 539
BsmFI GGGAC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 178, 289, 412
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 238, 511
BspPI GGATC 2 cut(s) 173, 297
BsrDI GCAATG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 3 cut(s) 178, 289, 412
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 2 cut(s) 408, 534
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 2 cut(s) 44, 286
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 331, 427
BstDEI CTNAG 3 cut(s) 246, 285, 498
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 2 cut(s) 324, 567
BstKTI GATC 3 cut(s) 181, 292, 415
BstMBI GATC 3 cut(s) 178, 289, 412
BstMWI GCNNNNNNNGC 2 cut(s) 134, 518
BstNI CCWGG 2 cut(s) 408, 534
BstSCI CCNGG 2 cut(s) 406, 532
BstSFI CTRYAG 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 2 cut(s) 324, 567
Cac8I GCNNGC 2 cut(s) 331, 427
CsiI ACCWGGT 1 cut(s) 406
Csp6I GTAC 4 cut(s) 33, 448, 456, 508
CviAII CATG 4 cut(s) 134, 326, 443, 560
CviJI RGCY 4 cut(s) 209, 393, 425, 429
CviKI_1 RGCY 4 cut(s) 209, 393, 425, 429
CviQI GTAC 4 cut(s) 33, 448, 456, 508
DdeI CTNAG 3 cut(s) 246, 285, 498
DpnI GATC 3 cut(s) 180, 291, 414
DpnII GATC 3 cut(s) 178, 289, 412
Eam1104I CTCTTC 2 cut(s) 44, 286
EarI CTCTTC 2 cut(s) 44, 286
Eco130I CCWWGG 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 406, 532
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 4 cut(s) 137, 329, 446, 563
FaiI YATR 9 cut(s) 31, 135, 327, 354, 374, 433, 444, 519, 561
FaqI GGGAC 1 cut(s) 104
FatI CATG 4 cut(s) 133, 325, 442, 559
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 412
FblI GTMKAC 1 cut(s) 525
FokI GGATG 2 cut(s) 331, 554
FspBI CTAG 3 cut(s) 87, 486, 615
Hin1II CATG 4 cut(s) 137, 329, 446, 563
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 224, 239, 248, 263
HphI GGTGA 3 cut(s) 188, 288, 422
Hpy166II GTNNAC 2 cut(s) 76, 526
Hpy188I TCNGA 4 cut(s) 196, 247, 338, 550
Hpy8I GTNNAC 2 cut(s) 76, 526
HpyAV CCTTC 3 cut(s) 351, 470, 545
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 387, 462, 521, 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 518
HpyF3I CTNAG 3 cut(s) 246, 285, 498
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 137, 329, 446, 563
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 178, 289, 412
LweI GCATC 1 cut(s) 342
MabI ACCWGGT 1 cut(s) 406
MaeI CTAG 3 cut(s) 87, 486, 615
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 94, 598
MalI GATC 3 cut(s) 180, 291, 414
MboI GATC 3 cut(s) 178, 289, 412
MboII GAAGA 8 cut(s) 31, 99, 204, 207, 234, 258, 273, 460
MluCI AATT 6 cut(s) 64, 361, 378, 492, 608, 632
MlyI GAGTC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 408, 534
MvaI CCWGG 2 cut(s) 408, 534
MwoI GCNNNNNNNGC 2 cut(s) 134, 518
NcoI CCATGG 1 cut(s) 442
NdeII GATC 3 cut(s) 178, 289, 412
NlaIII CATG 4 cut(s) 137, 329, 446, 563
NmuCI GTSAC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 361
PfeI GAWTC 3 cut(s) 224, 239, 263
PflMI CCANNNNNTGG 1 cut(s) 539
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 406, 532
PspGI CCWGG 2 cut(s) 406, 532
RsaI GTAC 4 cut(s) 34, 449, 457, 509
RsaNI GTAC 4 cut(s) 33, 448, 456, 508
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 3 cut(s) 178, 289, 412
ScaI AGTACT 1 cut(s) 457
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 408, 534
SexAI ACCWGGT 1 cut(s) 406
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 6 cut(s) 64, 361, 378, 492, 608, 632
SsiI CCGC 1 cut(s) 152
SspMI CTAG 3 cut(s) 87, 486, 615
StyD4I CCNGG 2 cut(s) 406, 532
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 591
TasI AATT 6 cut(s) 64, 361, 378, 492, 608, 632
TatI WGTACW 1 cut(s) 455
TfiI GAWTC 3 cut(s) 224, 239, 263
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 5 cut(s) 40, 159, 216, 314, 556
Van91I CCANNNNNTGG 1 cut(s) 539
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 2 cut(s) 361, 378
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 3 cut(s) 87, 486, 615
ZrmI AGTACT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.