Rmu_co8262875.1_g000001

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8262875.1
OG0001162
Physical Location & Seq
Reverse (-)
1 .. 812
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8262875.1_g000001.1.cds

Sequence Viewer

Length: 388 bp
ggggctaggaattttctgtaaaagctggaagcccagagaaggtgttccgattaaaggcgtattgtgtttctgccatggttatggtgatacttgcgttttcttctttgaaggtattgccaagcagattgcggcagctgggtacgctgtgtacgccatggactacccaggctttggcctttcagaaggattgcatggttatatcccgagctttgatcagctagctgacgatgttattgaacagtatacaaagattaaagcaaaaccagagttgagagggttgcctcacttcatattgggccagtccatgggtggagctgttactctcaaagttcactttaagcaaccatatgcatgggatggcatagttcttgtggctccaatgtgtaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

129

Amino Acids

14.11

Weight (kDa)

7.8

Isoelectric Point (pI)

23.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 171, 305
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 2 cut(s) 141, 150
AfiI CCNNNNNNNGG 4 cut(s) 39, 54, 171, 305
AgsI TTSAA 2 cut(s) 108, 237
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 6 cut(s) 25, 135, 208, 218, 222, 315
AluI AGCT 6 cut(s) 25, 135, 208, 218, 222, 315
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 2 cut(s) 173, 296
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 166
BclI TGATCA 1 cut(s) 212
BfaI CTAG 2 cut(s) 6, 219
BisI GCNGC 2 cut(s) 130, 133
BlsI GCNGC 2 cut(s) 131, 134
Bme1390I CCNGG 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 166
BmtI GCTAGC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 74, 154, 164, 304
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 54, 171, 305
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 4 cut(s) 74, 154, 164, 304
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 4 cut(s) 39, 54, 171, 305
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 135
BshFI GGCC 2 cut(s) 175, 298
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 4 cut(s) 39, 54, 171, 305
BsnI GGCC 2 cut(s) 175, 298
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 212
Bsp19I CCATGG 3 cut(s) 74, 154, 304
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 175, 298
BspLI GGNNCC 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 4 cut(s) 74, 154, 164, 304
BssMI GATC 1 cut(s) 212
BssNAI GTATAC 1 cut(s) 244
BssT1I CCWWGG 3 cut(s) 74, 154, 304
Bst1107I GTATAC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 220
BstDSI CCRYGG 3 cut(s) 74, 154, 304
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 1 cut(s) 215
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 141, 150
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 144
BstXI CCANNNNNNTGG 2 cut(s) 81, 352
BstZ17I GTATAC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 175, 298
BtgI CCRYGG 3 cut(s) 74, 154, 304
BtsCI GGATG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 140, 149
CviAII CATG 5 cut(s) 75, 155, 192, 305, 352
CviQI GTAC 2 cut(s) 140, 149
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eco130I CCWWGG 3 cut(s) 74, 154, 304
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 3 cut(s) 74, 154, 304
EcoT22I ATGCAT 1 cut(s) 353
ErhI CCWWGG 3 cut(s) 74, 154, 304
FaeI CATG 5 cut(s) 78, 158, 195, 308, 355
FatI CATG 5 cut(s) 74, 154, 191, 304, 351
FauNDI CATATG 1 cut(s) 347
FbaI TGATCA 1 cut(s) 212
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 130, 133
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 130, 133
FspBI CTAG 2 cut(s) 6, 219
GluI GCNGC 2 cut(s) 130, 133
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 2 cut(s) 175, 298
Hin1II CATG 5 cut(s) 78, 158, 195, 308, 355
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 3 cut(s) 149, 244, 332
Hpy188I TCNGA 2 cut(s) 49, 182
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 3 cut(s) 149, 244, 332
HpyAV CCTTC 3 cut(s) 33, 102, 177
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 191, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 150
Hsp92II CATG 5 cut(s) 78, 158, 195, 308, 355
Ksp22I TGATCA 1 cut(s) 212
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 312, 380
LpnPI CCDG 7 cut(s) 11, 47, 121, 151, 178, 277, 312
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 2 cut(s) 6, 219
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 1 cut(s) 92
MluCI AATT 1 cut(s) 10
MnlI CCTC 2 cut(s) 267, 292
Mph1103I ATGCAT 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 3 cut(s) 52, 253, 337
MslI CAYNNNNRTG 2 cut(s) 79, 350
MspA1I CMGCKG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 141, 150
NcoI CCATGG 3 cut(s) 74, 154, 304
NdeI CATATG 1 cut(s) 347
NdeII GATC 1 cut(s) 212
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 5 cut(s) 78, 158, 195, 308, 355
NlaIV GGNNCC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 43
PflMI CCANNNNNTGG 2 cut(s) 171, 305
PkrI GCNGC 2 cut(s) 131, 134
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 135
RsaI GTAC 2 cut(s) 141, 150
RsaNI GTAC 2 cut(s) 140, 149
RseI CAYNNNNRTG 2 cut(s) 79, 350
SaqAI TTAA 3 cut(s) 52, 253, 337
SatI GCNGC 2 cut(s) 130, 133
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 166
SetI ASST 8 cut(s) 27, 44, 113, 137, 210, 220, 224, 317
SmiMI CAYNNNNRTG 2 cut(s) 79, 350
Sse9I AATT 1 cut(s) 10
SsiI CCGC 1 cut(s) 129
SspMI CTAG 2 cut(s) 6, 219
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 3 cut(s) 74, 154, 304
TaaI ACNGT 1 cut(s) 241
TasI AATT 1 cut(s) 10
TauI GCSGC 1 cut(s) 132
Tru1I TTAA 3 cut(s) 52, 253, 337
Tru9I TTAA 3 cut(s) 52, 253, 337
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 278
Van91I CCANNNNNTGG 2 cut(s) 171, 305
XapI RAATTY 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 2 cut(s) 6, 219
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.