Rorug04G0282000

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001162
Physical Location & Seq
Reverse (-)
45525573 .. 45529591
4019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0282000.1

Sequence Viewer

Length: 1062 bp
ATGAATCACCTATTTGAAATTGAAATTGAATTCCTTAGAGTAATGAAATTGGTTGATCTCAATGTTCCTTTGGATGACGACTGTAAGATCACCGATGACACTAGAGTCCGAGCAGCTGTCCCCACCATCAAGTACTTGCTCGGAAATGGTGCCAGAGTCATCCTCGCTTCCCACTTGGGACGTCCCAAGGGTGTCACTCCCAAGTACAGTTTGAAGCCTCTTGTGCCAAGACTGTCTGAACTTCTTGGCATTCAGGCTGAAGACTCTATTGGTCCAGAAGTAGAAAAGCTGGCGGCTTCACTTCCTGATGGTGGTGTCCTTCTTCTTGAAAATGTGAGATTTTACAAAGAGGAGGAGAAGAACGATCCTGAGCATGCAAAGAAGCTCGCCTCTGTAGCTGATCTTTTTGTCAATGATGCATTCGGAACTGCACATAGAACCCATGCTTCAACTGAGGGTGTAACAAAATTCTTAAGGCCATCTGTAGCTGGTTTTCTTTTGCAGAAGGAACTCGACTATCTTGTTGGGGCAGTATCAAACCCAAAAAAGCCATTTGCAGCCATTGTTGGTGGTCCGAAGGTCTCATCCAAGATTGGAGTGATCGAGTCACTGTTAGAGAAGGTTGATTACTTAATTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAGGGTATCTCAGTGGGTTCATCTCTGGTGGAAAAGGATAAGCTAGAACTCGCTACATCACTCATTGCAAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGCTACCCACTGATGTCATAATTGCAGACAAATTTGCTCCTGATGCAAACAGCAAGATTGTTCCAGCTTCAAGCATCCCTGATGGGTGGATGGGATTGGATATTGGACCAGACTCTATTAAGACATTCAATGATGCACTTGATACCACTCAAACCATCATTTGGAACGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCAGTAGGAACAGAGACATGGTTGCTGTGCCTCTTATGTATGCTAGCCATTGCACGAGATGGAGCTAGTGGTACTGTTGTGAAGCGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

353

Amino Acids

38.1

Weight (kDa)

6.03

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 8 - 330 9.2e-130 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 930
AciI CCGC 2 cut(s) 293, 1054
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 3 cut(s) 29, 467, 800
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 3 cut(s) 134, 206, 1042
AfiI CCNNNNNNNGG 2 cut(s) 311, 930
AflII CTTAAG 1 cut(s) 472
AgsI TTSAA 8 cut(s) 17, 23, 29, 214, 329, 450, 840, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 8 cut(s) 116, 289, 385, 398, 488, 715, 836, 1034
AluI AGCT 8 cut(s) 116, 289, 385, 398, 488, 715, 836, 1034
Alw26I GTCTC 3 cut(s) 586, 768, 977
AlwI GGATC 1 cut(s) 359
AoxI GGCC 2 cut(s) 476, 744
ApeKI GCWGC 2 cut(s) 113, 557
ApoI RAATTY 3 cut(s) 29, 467, 800
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AspS9I GGNCC 4 cut(s) 272, 572, 875, 938
AsuHPI GGTGA 1 cut(s) 82
AsuNHI GCTAGC 1 cut(s) 1012
AvaII GGWCC 4 cut(s) 272, 572, 875, 938
BaeI ACNNNNGTAYC 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 611, 643
BauI CACGAG 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 125, 569
BccI CCATC 7 cut(s) 134, 302, 487, 845, 853, 932, 1022
BcoDI GTCTC 3 cut(s) 586, 768, 977
BfaI CTAG 4 cut(s) 102, 716, 1013, 1035
BfmI CTRYAG 2 cut(s) 393, 483
BfrI CTTAAG 1 cut(s) 472
BisI GCNGC 3 cut(s) 114, 294, 558
BlsI GCNGC 3 cut(s) 115, 295, 559
BmcAI AGTACT 1 cut(s) 134
Bme18I GGWCC 4 cut(s) 272, 572, 875, 938
BmgT120I GGNCC 4 cut(s) 272, 572, 875, 938
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 4 cut(s) 406, 802, 852, 892
BmtI GCTAGC 1 cut(s) 1016
BpiI GAAGAC 1 cut(s) 267
BplI GAGNNNNNCTC 2 cut(s) 147, 179
Bpu10I CCTNAGC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 586
BsaJI CCNNGG 2 cut(s) 186, 747
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 930
Bse3DI GCAATG 2 cut(s) 735, 1017
BseDI CCNNGG 2 cut(s) 186, 747
BseGI GGATG 5 cut(s) 79, 159, 584, 843, 864
BseLI CCNNNNNNNGG 2 cut(s) 311, 930
BseMI GCAATG 2 cut(s) 735, 1017
BseMII CTCAG 3 cut(s) 360, 444, 696
BseRI GAGGAG 2 cut(s) 365, 368
BseXI GCAGC 2 cut(s) 125, 569
BsgI GTGCAG 1 cut(s) 414
BshFI GGCC 2 cut(s) 478, 746
BshNI GGYRCC 1 cut(s) 149
BslFI GGGAC 3 cut(s) 104, 168, 192
BslI CCNNNNNNNGG 2 cut(s) 311, 930
BsmAI GTCTC 3 cut(s) 586, 768, 977
BsmFI GGGAC 3 cut(s) 104, 168, 192
BsmI GAATGC 2 cut(s) 249, 419
BsnI GGCC 2 cut(s) 478, 746
Bso31I GGTCTC 1 cut(s) 586
Bsp143I GATC 6 cut(s) 55, 87, 364, 400, 600, 651
BspACI CCGC 2 cut(s) 293, 1054
BspANI GGCC 2 cut(s) 478, 746
BspCNI CTCAG 3 cut(s) 361, 445, 695
BspLI GGNNCC 1 cut(s) 151
BspOI GCTAGC 1 cut(s) 1016
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 586
BsrDI GCAATG 2 cut(s) 735, 1017
BssECI CCNNGG 2 cut(s) 186, 747
BssMI GATC 6 cut(s) 55, 87, 364, 400, 600, 651
BssNI GRCGYC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 1023
BssT1I CCWWGG 2 cut(s) 186, 747
Bst2BI CACGAG 1 cut(s) 1023
Bst4CI ACNGT 5 cut(s) 83, 209, 234, 612, 1045
BstACI GRCGYC 1 cut(s) 181
BstAFI CTTAAG 1 cut(s) 472
BstC8I GCNNGC 4 cut(s) 291, 375, 387, 1014
BstDEI CTNAG 4 cut(s) 35, 369, 453, 682
BstF5I GGATG 5 cut(s) 79, 159, 584, 843, 864
BstKTI GATC 6 cut(s) 58, 90, 367, 403, 603, 654
BstMAI GTCTC 3 cut(s) 586, 768, 977
BstMBI GATC 6 cut(s) 55, 87, 364, 400, 600, 651
BstMWI GCNNNNNNNGC 3 cut(s) 223, 395, 812
BstNSI RCATGY 1 cut(s) 377
BstSFI CTRYAG 2 cut(s) 393, 483
BstV1I GCAGC 2 cut(s) 125, 569
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 478, 746
BtsCI GGATG 5 cut(s) 79, 159, 584, 843, 864
BtsIMutI CAGTG 3 cut(s) 608, 690, 777
Cac8I GCNNGC 4 cut(s) 291, 375, 387, 1014
Cfr13I GGNCC 4 cut(s) 272, 572, 875, 938
Csp6I GTAC 3 cut(s) 133, 205, 1041
CviAII CATG 3 cut(s) 374, 443, 987
CviQI GTAC 3 cut(s) 133, 205, 1041
DdeI CTNAG 4 cut(s) 35, 369, 453, 682
DpnI GATC 6 cut(s) 57, 89, 366, 402, 602, 653
DpnII GATC 6 cut(s) 55, 87, 364, 400, 600, 651
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 186, 747
Eco31I GGTCTC 1 cut(s) 586
Eco47I GGWCC 4 cut(s) 272, 572, 875, 938
Eco57I CTGAAG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 186, 747
EcoT22I ATGCAT 1 cut(s) 421
ErhI CCWWGG 2 cut(s) 186, 747
FaeI CATG 3 cut(s) 377, 446, 990
FaiI YATR 7 cut(s) 375, 435, 444, 788, 988, 1006, 1010
FaqI GGGAC 3 cut(s) 104, 168, 192
FatI CATG 3 cut(s) 373, 442, 986
Fnu4HI GCNGC 3 cut(s) 114, 294, 558
FokI GGATG 5 cut(s) 86, 146, 571, 830, 871
Fsp4HI GCNGC 3 cut(s) 114, 294, 558
FspBI CTAG 4 cut(s) 102, 716, 1013, 1035
GluI GCNGC 3 cut(s) 114, 294, 558
HaeIII GGCC 2 cut(s) 478, 746
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 3 cut(s) 377, 446, 990
HinfI GANTC 6 cut(s) 4, 105, 156, 263, 605, 881
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 5 cut(s) 110, 143, 238, 425, 576
Hpy188III TCNNGA 5 cut(s) 275, 305, 326, 368, 809
HpyAV CCTTC 4 cut(s) 329, 499, 571, 613
HpyCH4III ACNGT 5 cut(s) 83, 209, 234, 612, 1045
HpyCH4IV ACGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 395, 812
HpyF3I CTNAG 4 cut(s) 35, 369, 453, 682
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 3 cut(s) 377, 446, 990
Kzo9I GATC 6 cut(s) 55, 87, 364, 400, 600, 651
LmnI GCTCC 2 cut(s) 811, 1031
Lsp1109I GCAGC 2 cut(s) 125, 569
LweI GCATC 4 cut(s) 406, 802, 852, 892
MaeI CTAG 4 cut(s) 102, 716, 1013, 1035
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 3 cut(s) 193, 460, 606
MalI GATC 6 cut(s) 57, 89, 366, 402, 602, 653
MboI GATC 6 cut(s) 55, 87, 364, 400, 600, 651
MboII GAAGA 4 cut(s) 272, 314, 370, 646
MluCI AATT 8 cut(s) 18, 24, 29, 47, 467, 633, 789, 800
MlyI GAGTC 5 cut(s) 114, 165, 257, 614, 875
MnlI CCTC 8 cut(s) 173, 228, 343, 346, 400, 448, 638, 1010
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 3 cut(s) 473, 632, 888
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 472
Mva1269I GAATGC 2 cut(s) 249, 419
MwoI GCNNNNNNNGC 3 cut(s) 223, 395, 812
NdeII GATC 6 cut(s) 55, 87, 364, 400, 600, 651
NheI GCTAGC 1 cut(s) 1012
NlaIII CATG 3 cut(s) 377, 446, 990
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 193, 606
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 1 cut(s) 377
PaeI GCATGC 1 cut(s) 377
PctI GAATGC 2 cut(s) 249, 419
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 930
PkrI GCNGC 3 cut(s) 115, 295, 559
PleI GAGTC 5 cut(s) 113, 164, 257, 613, 875
PpsI GAGTC 5 cut(s) 113, 164, 257, 613, 875
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 4 cut(s) 272, 572, 875, 938
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 134, 206, 1042
RsaNI GTAC 3 cut(s) 133, 205, 1041
SaqAI TTAA 3 cut(s) 473, 632, 888
SatI GCNGC 3 cut(s) 114, 294, 558
Sau3AI GATC 6 cut(s) 55, 87, 364, 400, 600, 651
Sau96I GGNCC 4 cut(s) 272, 572, 875, 938
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 5 cut(s) 114, 165, 257, 614, 875
SfaNI GCATC 4 cut(s) 406, 802, 852, 892
SfcI CTRYAG 2 cut(s) 393, 483
SinI GGWCC 4 cut(s) 272, 572, 875, 938
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
SphI GCATGC 1 cut(s) 377
Sse9I AATT 8 cut(s) 18, 24, 29, 47, 467, 633, 789, 800
SsiI CCGC 2 cut(s) 293, 1054
SspMI CTAG 4 cut(s) 102, 716, 1013, 1035
StyI CCWWGG 2 cut(s) 186, 747
TaaI ACNGT 5 cut(s) 83, 209, 234, 612, 1045
TaiI ACGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 513, 603
TasI AATT 8 cut(s) 18, 24, 29, 47, 467, 633, 789, 800
TatI WGTACW 2 cut(s) 132, 204
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 473, 632, 888
Tru9I TTAA 3 cut(s) 473, 632, 888
TscAI CASTG 3 cut(s) 615, 690, 784
TseFI GTSAC 2 cut(s) 193, 606
TseI GCWGC 2 cut(s) 113, 557
Tsp45I GTSAC 2 cut(s) 193, 606
TspDTI ATGAA 3 cut(s) 17, 59, 681
TspGWI ACGGA 1 cut(s) 951
TspRI CASTG 3 cut(s) 615, 690, 784
Van91I CCANNNNNTGG 1 cut(s) 930
Vha464I CTTAAG 1 cut(s) 472
VpaK11BI GGWCC 4 cut(s) 272, 572, 875, 938
XapI RAATTY 3 cut(s) 29, 467, 800
XceI RCATGY 1 cut(s) 377
XspI CTAG 4 cut(s) 102, 716, 1013, 1035
ZraI GACGTC 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.