RLG00000001398

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001162
Physical Location & Seq
Forward (+)
15035755 .. 15041278
5524 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001398

Sequence Viewer

Length: 495 bp
ATGAGATTCAAAGTTTTGATCTTGATAATTGAACTTATAATGGATCATGCTGGCATCAGAACAGAGGAGTGGTATGGAAGGAATTCAAGGGGTATGGAAATTTTCTGCAAAAGCTGGTTGCCAAAACCAGGTGATCAAATCAAAGCTGGCTTATGTTTCTGCCATGGGTACGGTAGTACTTGCACATTCTTCTTTGAAGGTATTGCTAGGAGAATTGCTCAGTCTGGGTATGCTGTGTATGCAGTAGACTATCCAGGTTTTGATCTTTCTGAAGGGTTGCATGGTTTCATCCCAGATTTTGATGAGTTGGTCGATGATGTTATTGAACAATTTACTAGTATCAAAGGAAGATCTGAAGTGAAAGGTTTGCCCTTTTTTATAATGGGGGAGTCGCTGGGTGGAGCTGTCACGCTAAAGATTCATCTAAAGGAACCACATGAATGGGATGGAGTGATCCTTGTAGCTCCAATGTGTAAAGCAGCTGCAGCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

165

Amino Acids

18.28

Weight (kDa)

5.5

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 46 - 161 2.2e-30 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 51 - 156 1.7e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 53 - 158 3e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 38, 380
AccI GTMKAC 1 cut(s) 246
AclWI GGATC 2 cut(s) 51, 448
AcsI RAATTY 2 cut(s) 82, 99
AcuI CTGAAG 2 cut(s) 291, 375
AfaI GTAC 2 cut(s) 170, 178
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 5 cut(s) 10, 32, 87, 197, 326
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 2 cut(s) 127, 253
AluBI AGCT 5 cut(s) 114, 146, 404, 464, 482
AluI AGCT 5 cut(s) 114, 146, 404, 464, 482
AlwI GGATC 2 cut(s) 51, 448
ApeKI GCWGC 3 cut(s) 479, 482, 485
ApoI RAATTY 2 cut(s) 82, 99
Asp700I GAANNNNTTC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 160, 193
BbvI GCAGC 2 cut(s) 469, 491
BccI CCATC 1 cut(s) 440
BciT130I CCWGG 2 cut(s) 129, 255
BclI TGATCA 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 207, 336
BfmI CTRYAG 1 cut(s) 483
BglII AGATCT 1 cut(s) 350
BisI GCNGC 3 cut(s) 480, 483, 486
BlsI GCNGC 3 cut(s) 481, 484, 487
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 129, 255
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 129, 255
BmsI GCATC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 129, 255
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 288, 451
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 469, 491
BseYI CCCAGC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 128
Bsp143I GATC 6 cut(s) 18, 43, 133, 262, 350, 453
Bsp19I CCATGG 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 2 cut(s) 51, 448
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 6 cut(s) 18, 43, 133, 262, 350, 453
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 129, 255
Bst4CI ACNGT 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 52, 148
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 288, 451
BstKTI GATC 6 cut(s) 21, 46, 136, 265, 353, 456
BstMBI GATC 6 cut(s) 18, 43, 133, 262, 350, 453
BstMWI GCNNNNNNNGC 2 cut(s) 239, 485
BstNI CCWGG 2 cut(s) 129, 255
BstSCI CCNGG 2 cut(s) 127, 253
BstSFI CTRYAG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 469, 491
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 288, 451
Cac8I GCNNGC 2 cut(s) 52, 148
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 2 cut(s) 169, 177
CviAII CATG 4 cut(s) 47, 164, 281, 437
CviJI RGCY 7 cut(s) 114, 146, 150, 404, 464, 482, 488
CviKI_1 RGCY 7 cut(s) 114, 146, 150, 404, 464, 482, 488
CviQI GTAC 2 cut(s) 169, 177
DdeI CTNAG 1 cut(s) 219
DpnI GATC 6 cut(s) 20, 45, 135, 264, 352, 455
DpnII GATC 6 cut(s) 18, 43, 133, 262, 350, 453
Eco130I CCWWGG 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 291, 375
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 127, 253
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 4 cut(s) 50, 167, 284, 440
FatI CATG 4 cut(s) 46, 163, 280, 436
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 480, 483, 486
FokI GGATG 2 cut(s) 275, 458
Fsp4HI GCNGC 3 cut(s) 480, 483, 486
FspBI CTAG 2 cut(s) 207, 336
GluI GCNGC 3 cut(s) 480, 483, 486
GsaI CCCAGC 1 cut(s) 398
Hin1II CATG 4 cut(s) 50, 167, 284, 440
HinfI GANTC 3 cut(s) 6, 389, 418
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 59, 271, 355
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 3 cut(s) 72, 191, 266
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 5 cut(s) 108, 183, 242, 280, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 485
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 4 cut(s) 50, 167, 284, 440
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 6 cut(s) 18, 43, 133, 262, 350, 453
LmnI GCTCC 2 cut(s) 401, 469
Lsp1109I GCAGC 2 cut(s) 469, 491
LweI GCATC 1 cut(s) 63
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 2 cut(s) 207, 336
MaeIII GTNAC 1 cut(s) 406
MalI GATC 6 cut(s) 20, 45, 135, 264, 352, 455
MboI GATC 6 cut(s) 18, 43, 133, 262, 350, 453
MboII GAAGA 2 cut(s) 181, 360
MflI RGATCY 1 cut(s) 350
MluCI AATT 5 cut(s) 27, 82, 99, 213, 329
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 82
MslI CAYNNNNRTG 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 129, 255
MvaI CCWGG 2 cut(s) 129, 255
MwoI GCNNNNNNNGC 2 cut(s) 239, 485
NcoI CCATGG 1 cut(s) 163
NdeII GATC 6 cut(s) 18, 43, 133, 262, 350, 453
NlaIII CATG 4 cut(s) 50, 167, 284, 440
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 6, 418
PkrI GCNGC 3 cut(s) 481, 484, 487
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PsiI TTATAA 2 cut(s) 38, 380
Psp6I CCWGG 2 cut(s) 127, 253
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 2 cut(s) 127, 253
PspN4I GGNNCC 1 cut(s) 432
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 170, 178
RsaNI GTAC 2 cut(s) 169, 177
RseI CAYNNNNRTG 1 cut(s) 439
SatI GCNGC 3 cut(s) 480, 483, 486
Sau3AI GATC 6 cut(s) 18, 43, 133, 262, 350, 453
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 129, 255
SetI ASST 9 cut(s) 116, 133, 148, 202, 259, 367, 406, 466, 484
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 439
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 5 cut(s) 27, 82, 99, 213, 329
SspMI CTAG 2 cut(s) 207, 336
StyD4I CCNGG 2 cut(s) 127, 253
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 312
TasI AATT 5 cut(s) 27, 82, 99, 213, 329
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 2 cut(s) 6, 418
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 3 cut(s) 479, 482, 485
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 277, 410, 453
XapI RAATTY 2 cut(s) 82, 99
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 207, 336
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.