Rw4G029420

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001162
Physical Location & Seq
Forward (+)
56098515 .. 56100753
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029420.1

Sequence Viewer

Length: 780 bp
ATGGAAGGAATTCAAGGGGTATGGAAATTTTCTGCAAAAGCTGGTTGCCAAAATCGGGTGATCAAATCAAAGCTGGCTTATGTTTTTGCCATGGGTACGGTAGTACTTGTACATTCTTCTTTGAAGGTTGGCCTCTGTGTCTTTTCATTTTCTGATTGCCAAAATTTGAAAGGTTTTATCTTTAGGCTTGAAATTTTGATTTCAGGTATTGCTAGGAGAATTGCTCAGTCTGGGTACGCTGTATATGCAGTAGACTATCCAGGTTTTGGTCTTTCTGAAGGGTTGCATGGTTTCATCCCAGACTTTGATGAGTTGGTCGATGATGTTATTGAACAATTTACTAGTATCAAAGGAAGATCTGAAGTGGAAGGTTTGCCCTTTTTTATAATGGGGGAGTCGATGGGTGGAGCTGTGACTCTGAAGATTCATCTAAAGGAACCGCATAAATGGGATGGAGTGATCCTTGTAGCTCCAATGTGTAAAATTGCAGATGATGTGATGCCTCCAGCAATAGCGCTGAAGCTATTAGCCTTCATGTCTGAAGTTTTGCCTGAGGCAAAACTCTTCCCACAGAAAGATATAGCTCATCTAAGCTACAGAGAGCTCGGAAAGAGAAAAACGGCTGGTTACAATGTGATTTCTTATAAGGACCAAATGCGATCAAGAACAGCTGCAGAACTTCTGAAGGCCACTAGCGATATTGAAATGCAGTTGGATAAGGTTTCATCCCCATTGCTAATTCTTCATGGAGAAGCAGATAAGGTGAAGACCCTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

259

Amino Acids

28.63

Weight (kDa)

7.67

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 70 - 255 3.5e-44 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 70 - 205 4.5e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 75 - 189 1.5e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 386, 645
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 1 cut(s) 252
AciI CCGC 1 cut(s) 440
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 4 cut(s) 9, 26, 163, 192
AcuI CTGAAG 6 cut(s) 297, 381, 440, 539, 561, 704
AfaI GTAC 4 cut(s) 97, 105, 111, 236
AfeI AGCGCT 1 cut(s) 516
AfiI CCNNNNNNNGG 2 cut(s) 55, 266
AgsI TTSAA 6 cut(s) 14, 124, 169, 191, 332, 704
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 9 cut(s) 41, 73, 410, 470, 523, 584, 594, 604, 671
AluI AGCT 9 cut(s) 41, 73, 410, 470, 523, 584, 594, 604, 671
Alw21I GWGCWC 1 cut(s) 606
AlwI GGATC 1 cut(s) 454
Aor51HI AGCGCT 1 cut(s) 516
AoxI GGCC 2 cut(s) 130, 687
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 4 cut(s) 9, 26, 163, 192
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 1 cut(s) 649
AsuHPI GGTGA 2 cut(s) 70, 775
AvaII GGWCC 1 cut(s) 649
AxyI CCTNAGG 1 cut(s) 552
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
BanII GRGCYC 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 773
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 658
BccI CCATC 2 cut(s) 394, 446
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 60
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 3 cut(s) 213, 342, 693
BfmI CTRYAG 2 cut(s) 595, 672
BfoI RGCGCY 1 cut(s) 518
BglII AGATCT 1 cut(s) 356
BisI GCNGC 1 cut(s) 672
BlsI GCNGC 1 cut(s) 673
BmcAI AGTACT 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 649
BmgT120I GGNCC 1 cut(s) 649
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 773
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpmI CTGGAG 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 266
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 3 cut(s) 294, 457, 725
BseLI CCNNNNNNNGG 2 cut(s) 55, 266
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 2 cut(s) 239, 543
BseXI GCAGC 1 cut(s) 658
BshFI GGCC 2 cut(s) 132, 689
BsiHKAI GWGCWC 1 cut(s) 606
BslI CCNNNNNNNGG 2 cut(s) 55, 266
BsnI GGCC 2 cut(s) 132, 689
Bsp1286I GDGCHC 1 cut(s) 606
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 4 cut(s) 60, 356, 459, 659
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 1 cut(s) 440
BspANI GGCC 2 cut(s) 132, 689
BspCNI CTCAG 2 cut(s) 238, 544
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 676
BspPI GGATC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 731
BsrGI TGTACA 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 4 cut(s) 60, 356, 459, 659
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 225, 552, 590
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 294, 457, 725
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 4 cut(s) 63, 359, 462, 662
BstMBI GATC 4 cut(s) 60, 356, 459, 659
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 2 cut(s) 595, 672
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 1 cut(s) 773
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 2 cut(s) 132, 689
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 294, 457, 725
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 649
Csp6I GTAC 4 cut(s) 96, 104, 110, 235
CviAII CATG 4 cut(s) 91, 287, 535, 746
CviQI GTAC 4 cut(s) 96, 104, 110, 235
DdeI CTNAG 3 cut(s) 225, 552, 590
DpnI GATC 4 cut(s) 62, 358, 461, 661
DpnII GATC 4 cut(s) 60, 356, 459, 659
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 649
Eco47III AGCGCT 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 6 cut(s) 297, 381, 440, 539, 561, 704
Eco81I CCTNAGG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 606
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 4 cut(s) 94, 290, 538, 749
FatI CATG 4 cut(s) 90, 286, 534, 745
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 672
FokI GGATG 3 cut(s) 281, 464, 712
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 1 cut(s) 672
FspBI CTAG 3 cut(s) 213, 342, 693
GlaI GCGC 1 cut(s) 516
GluI GCNGC 1 cut(s) 672
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 2 cut(s) 132, 689
HhaI GCGC 1 cut(s) 517
Hin1II CATG 4 cut(s) 94, 290, 538, 749
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HinfI GANTC 3 cut(s) 395, 415, 424
HphI GGTGA 2 cut(s) 70, 775
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 7 cut(s) 154, 277, 361, 420, 541, 608, 684
Hpy188III TCNNGA 1 cut(s) 663
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 5 cut(s) 118, 272, 362, 541, 679
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 6 cut(s) 35, 248, 286, 488, 674, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 225, 552, 590
Hsp92II CATG 4 cut(s) 94, 290, 538, 749
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 4 cut(s) 60, 356, 459, 659
LmnI GCTCC 2 cut(s) 407, 475
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 1 cut(s) 489
MaeI CTAG 3 cut(s) 213, 342, 693
MaeIII GTNAC 2 cut(s) 412, 626
MalI GATC 4 cut(s) 62, 358, 461, 661
MboI GATC 4 cut(s) 60, 356, 459, 659
MboII GAAGA 6 cut(s) 108, 366, 433, 556, 734, 778
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 8 cut(s) 9, 26, 163, 192, 219, 335, 483, 738
MlyI GAGTC 2 cut(s) 404, 409
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 3 cut(s) 143, 513, 547
MroXI GAANNNNTTC 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 671
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 245
NcoI CCATGG 1 cut(s) 90
NdeII GATC 4 cut(s) 60, 356, 459, 659
NlaIII CATG 4 cut(s) 94, 290, 538, 749
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 673
PleI GAGTC 2 cut(s) 403, 409
PpsI GAGTC 2 cut(s) 403, 409
PsiI TTATAA 2 cut(s) 386, 645
Psp124BI GAGCTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 649
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 4 cut(s) 97, 105, 111, 236
RsaNI GTAC 4 cut(s) 96, 104, 110, 235
SacI GAGCTC 1 cut(s) 606
SatI GCNGC 1 cut(s) 672
Sau3AI GATC 4 cut(s) 60, 356, 459, 659
Sau96I GGNCC 1 cut(s) 649
ScaI AGTACT 1 cut(s) 105
SchI GAGTC 2 cut(s) 404, 409
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 2 cut(s) 595, 672
SinI GGWCC 1 cut(s) 649
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 8 cut(s) 9, 26, 163, 192, 219, 335, 483, 738
SsiI CCGC 1 cut(s) 440
SspMI CTAG 3 cut(s) 213, 342, 693
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 318, 398
TasI AATT 8 cut(s) 9, 26, 163, 192, 219, 335, 483, 738
TatI WGTACW 2 cut(s) 103, 109
TfiI GAWTC 1 cut(s) 424
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 6 cut(s) 135, 283, 416, 523, 714, 734
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 649
XapI RAATTY 4 cut(s) 9, 26, 163, 192
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 3 cut(s) 213, 342, 693
ZrmI AGTACT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.